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Fig. 1 | BMC Genomics

Fig. 1

From: Hierarchical genomic analysis of carried and invasive serogroup A Neisseria meningitidis during the 2011 epidemic in Chad

Fig. 1

rMLST Neighbor-Joining Tree of cc5 NmA. The relationship from the concatenated nucleotide sequences of the ribosomal genes between the NmA isolates from Chad (n = 23) and other publically available cc5 NmA genomes from the PubMLST database is represented in this tree. The label on each node indicates: the PubMLST ID number, the country, the date and the rST for each isolate represented. A total of 141 other cc5 NmA isolates were found in PubMLST but only one representative of each unique strain (defined as isolates sharing the same alleles at all 53 ribosomal locus) was included in the tree alongside all the Chadian NmA from the 2011 meningitis epidemic; the full list of publically available cc5 NmA isolates is shown in Additional file 1: Table S2. The seven-locus MLST profiles of the isolates are indicated by different colored boxes. The position of the reference genome used in this study (WUE 2594) is represented by a black star

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