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Table 2 Copia retrotransposon abundance among fungal genomes

From: Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi

Class/Order Species Genome Size (Mb) RIP-likea Genomic proportion (%)a
     GalEa FunCo1 other Copia GalEa/Copia
Dothideomycetes        
 Pleosporales Pyrenophora teres 33.58   0.15 ne ne ne
 Pleosporales Pyrenophora tritici-repentis 37.84 Yes [43] 1.57 2.00 1.17 0.33
 Incertae sedis Cenococcum geophilum 177.57 Probably 10.40 1.61 1.74 0.76
Eurotiomycetes
 Eurotiales Neosartorya fischeri 32.55   0.03 0.06 0.22 0.08
 Eurotiales Talaromyces aculeatus 37.27   0.46 0.14 0.07 0.70
 Eurotiales Talaromyces marneffei 28.64   0.44 0.88 0.10 0.31
 Eurotiales Talaromyces stipitatus 35.69   1.27 1.10 0.41 0.46
Leotiomycetes
 Erysiphales Erysiphe pisi 49.38 No [47] 0.48 0.11 0.97 0.31
 Helotiales Botryotinia fuckeliana 42.66   0.10 0.00 0.00 0.80
 Helotiales Chalara longipes 52.43   0.13 0.00 0.35 0.28
 Helotiales Meliniomyces bicolor 82.38   5.62 0.71 0.35 0.84
 Helotiales Meliniomyces variabilis 55.86   0.15 0.34 0.47 0.16
 Helotiales Sclerotinia sclerotiorum 38.33 Yes [73] 0.10 0.41 0.40 0.11
 Incertae sedis Oidiodendron maius 46.43 Yes [74] 0.25 0.26 1.12 0.15
Sordariomycetes
 Glomerellales Colletotrichum fiorinae 50.04   0.06 0.00 0.01 0.82
 Glomerellales Colletotrichum graminicola 51.60 Yes [13] 2.52 0.00 0.95 0.73
 Glomerellales Colletotrichum higginsianum 49.08   0.07 ne ne ne
 Glomerellales Verticillium albo-atrum 32.83 Yes [75] 0.01 0.06 0.00 0.13
 Glomerellales Verticillium dahliae 33.83 Yes [75] 0.20 0.50 0.00 0.28
 Hypocreales Beauveria bassiana 33.69 No [76] 0.06 0.00 0.02 0.75
 Hypocreales Cordyceps militaris 32.27 Yes [54] 1.51 0.00 0.29 0.84
 Hypocreales Metarhizium robertsii 39.14 Yes [76] 0.03 0.00 0.14 0.17
 Magnaporthales Gaeumannomyces graminis 43.62   0.06 1.05 0.12 0.05
 Magnaporthales Magnaporthe oryzae 41.03 Yes [77] 0.02 0.00 2.38 0.01
 Magnaporthales Magnaporthe poae 39.50   0.05 0.00 0.07 0.41
 Ophiostomatales Ophiostoma piceae 32.84   0.03 ne ne ne
 Sordariales Chaetomium globosum 34.89 No [13] 0.13 0.18 0.10 0.32
 Xylariales Daldinia eschscholzii EC12 37.55   0.12 ne ne ne
 Xylariales Hypoxylon sp. CO27-5 46.59   0.09 ne ne ne
 Xylariales Hypoxylon sp. EC38 47.30   0.03 0.00 0.03 0.47
  1. ne not estimated
  2. aRIP-like mutation events already (Yes) or never (No) detected according to the reference mentioned; probably, according to our results
  3. bSequences obtained using RepeatMasker (unlimited size)