Table 2 Copia retrotransposon abundance among fungal genomes

Dothideomycetes

 Pleosporales

Pyrenophora teres

33.58

0.15

ne

ne

ne

 Pleosporales

Pyrenophora tritici-repentis

37.84

Yes [43]

1.57

2.00

1.17

0.33

 Incertae sedis

Cenococcum geophilum

177.57

Probably

10.40

1.61

1.74

0.76

 Eurotiales

Neosartorya fischeri

32.55

0.03

0.06

0.22

0.08

 Eurotiales

Talaromyces aculeatus

37.27

0.46

0.14

0.07

0.70

 Eurotiales

Talaromyces marneffei

28.64

0.44

0.88

0.10

0.31

 Eurotiales

Talaromyces stipitatus

35.69

1.27

1.10

0.41

0.46

 Erysiphales

Erysiphe pisi

49.38

No [47]

0.48

0.11

0.97

0.31

 Helotiales

Botryotinia fuckeliana

42.66

0.10

0.00

0.00

0.80

 Helotiales

Chalara longipes

52.43

0.13

0.00

0.35

0.28

 Helotiales

Meliniomyces bicolor

82.38

5.62

0.71

0.35

0.84

 Helotiales

Meliniomyces variabilis

55.86

0.15

0.34

0.47

0.16

 Helotiales

Sclerotinia sclerotiorum

38.33

Yes [73]

0.10

0.41

0.40

0.11

 Incertae sedis

Oidiodendron maius

46.43

Yes [74]

0.25

0.26

1.12

0.15

 Glomerellales

Colletotrichum fiorinae

50.04

0.06

0.00

0.01

0.82

 Glomerellales

Colletotrichum graminicola

51.60

Yes [13]

2.52

0.00

0.95

0.73

 Glomerellales

Colletotrichum higginsianum

49.08

0.07

ne

ne

ne

 Glomerellales

Verticillium albo-atrum

32.83

Yes [75]

0.01

0.06

0.00

0.13

 Glomerellales

Verticillium dahliae

33.83

Yes [75]

0.20

0.50

0.00

0.28

 Hypocreales

Beauveria bassiana

33.69

No [76]

0.06

0.00

0.02

0.75

 Hypocreales

Cordyceps militaris

32.27

Yes [54]

1.51

0.00

0.29

0.84

 Hypocreales

Metarhizium robertsii

39.14

Yes [76]

0.03

0.00

0.14

0.17

 Magnaporthales

Gaeumannomyces graminis

43.62

0.06

1.05

0.12

0.05

 Magnaporthales

Magnaporthe oryzae

41.03

Yes [77]

0.02

0.00

2.38

0.01

 Magnaporthales

Magnaporthe poae

39.50

0.05

0.00

0.07

0.41

 Ophiostomatales

Ophiostoma piceae

32.84

0.03

ne

ne

ne

 Sordariales

Chaetomium globosum

34.89

No [13]

0.13

0.18

0.10

0.32

 Xylariales

Daldinia eschscholzii EC12

37.55

0.12

ne

ne

ne

 Xylariales

Hypoxylon sp. CO27-5

46.59

0.09

ne

ne

ne

 Xylariales

Hypoxylon sp. EC38

47.30

0.03

0.00

0.03

0.47