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Table 3 Genetic diversity and divergence among cultivars/lines and landraces of the Andean and Mesoamerican gene pools

From: In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping

Group S P NAP HO (SE) HE (SE) F (SE) FST (SE) FIS (SE) FIT (SE)
Mesoamerican Cult/Linesa 57 87.51% 463 0.038 ± 0.001 0.177 ± 0.003 0.652 ± 0.006 0.031 ± 0.001 0.836 ± 0.001 0.841 ± 0.001
Landraces 54 90.78% 627 0.040 ± 0.001 0.185 ± 0.002 0.646 ± 0.006
Total 111 100.00% - 0.039 ± 0.001 0.185 ± 0.002 0.652 ± 0.006    
Andean Cult/Linesa 31 88.39% 1217 0.046 ± 0.002 0.145 ± 0.002 0.647 ± 0.007 0.012 ± 0.002 0.738 ± 0.001 0.741 ± 0.001
Landraces 33 73.49% 533 0.050 ± 0.002 0.099 ± 0.002 0.377 ± 0.007
Total 64 100.00% - 0.048 ± 0.002 0.123 ± 0.002 0.561 ± 0.007    
  1. The sample size (S), percentage of polymorphic loci (P), number of private alleles (NAP), observed heterozygosity (H O ), gene diversity (H E), inbreeding coefficient (F), genetic differentiation (F ST ), fixation index (F IS ), total inbreeding (F IT ), and standard deviations (SE) are presented
  2. aCult/Lines: cultivars/lines