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Table 4 Summary of the P. vulgaris genome-wide diversity based on SNPs-DArTseq

From: In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping

Gene pool Group N S Θw SE – θw NDw SE - NDw π SE - π P M
Andean Cult/Linesa 31 3506 0.000777 0.000015 0.000554 0.000014 0.002171 0.000281 3858 1415
Landraces 33 2647 0.000580 0.000013 0.000386 0.000011 0.001357 0.000228 3190 2083
Total 64 3889 0.000728 0.000013 0.000471 0.000012 0.001781 0.000266 4364 909
Mesoamerican Cult/Linesa 57 3283 0.000641 0.000014 0.000665 0.000020 0.004386 0.000488 4177 1096
Landraces 54 3460 0.000667 0.000014 0.000677 0.000019 0.004330 0.000566 4340 933
Total 111 3957 0.000667 0.000012 0.000685 0.000019 0.004541 0.000572 4778 495
Whole All 181 5241 0.000713 0.000010 0.002038 0.000029 0.017125 0.001540 5273 0
  1. The number of samples (N), number of segregating sites (S), Watterson’s nucleotide diversity (θw), nucleotide diversity within (NDw), diversity from Nei (π), number of polymorphic SNPs (P), number of monomorphic SNPs (M), and standard deviations (SE) are presented
  2. aCult/Lines: cultivars/lines