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Table 5 Haplotype blocks identification using the SNPs-DArTseq for the all accessions and within Andean (AND) and Mesoamerican (MESO) gene pools

From: In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping

Chromosomes Total of blocks Average SNP/block Blocks size (kb) Physical length (kb)a Block coverage (%)
All AND MESO All AND MESO All AND MESO All All
1 31 2 22 13.94 4 3.64 42497.69 67.1 1831.76 52183.5 81.44
2 56 25 41 10.71 8.16 1.07 38734.17 22616.37 10256.22 49033.7 78.99
3 37 5 20 12.95 2.2 4.2 42067.03 28.27 6336.05 52218.6 80.56
4 35 19 18 6.83 6.11 5.22 30826.24 18181.43 20469.35 45793.2 67.32
5 35 9 20 8.89 7.33 3.8 28497.35 3365.23 10704.77 40237.5 70.82
6 40 10 23 10.58 7.4 3 24709.16 132885.33 1542.29 31973.2 77.28
7 37 5 18 11.35 2 2.78 35632.69 31.9 506.8 51698.4 68.92
8 62 5 36 6.9 3.8 3.5 35786.86 354.41 2954.98 59634.6 60.01
9 33 4 16 13.27 4.5 3.63 30338.75 1362.9 1922.26 37399.6 81.12
10 36 6 17 6.89 5.5 3.06 26847.85 1712.86 3235.07 43213.2 62.13
11 35 8 17 9.6 4.13 3.29 32104.09 659.16 2795.36 50203.6 63.95
Total 437 98 248 9.96 6.04 3.18 368041.88 181264.96 62554.91 513589.1 71.66b
  1. aSchmutz et al. [9]
  2. bAverage genome block coverage for the all accessions