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Table 5 Haplotype blocks identification using the SNPs-DArTseq for the all accessions and within Andean (AND) and Mesoamerican (MESO) gene pools

From: In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping

Chromosomes

Total of blocks

Average SNP/block

Blocks size (kb)

Physical length (kb)a

Block coverage (%)

All

AND

MESO

All

AND

MESO

All

AND

MESO

All

All

1

31

2

22

13.94

4

3.64

42497.69

67.1

1831.76

52183.5

81.44

2

56

25

41

10.71

8.16

1.07

38734.17

22616.37

10256.22

49033.7

78.99

3

37

5

20

12.95

2.2

4.2

42067.03

28.27

6336.05

52218.6

80.56

4

35

19

18

6.83

6.11

5.22

30826.24

18181.43

20469.35

45793.2

67.32

5

35

9

20

8.89

7.33

3.8

28497.35

3365.23

10704.77

40237.5

70.82

6

40

10

23

10.58

7.4

3

24709.16

132885.33

1542.29

31973.2

77.28

7

37

5

18

11.35

2

2.78

35632.69

31.9

506.8

51698.4

68.92

8

62

5

36

6.9

3.8

3.5

35786.86

354.41

2954.98

59634.6

60.01

9

33

4

16

13.27

4.5

3.63

30338.75

1362.9

1922.26

37399.6

81.12

10

36

6

17

6.89

5.5

3.06

26847.85

1712.86

3235.07

43213.2

62.13

11

35

8

17

9.6

4.13

3.29

32104.09

659.16

2795.36

50203.6

63.95

Total

437

98

248

9.96

6.04

3.18

368041.88

181264.96

62554.91

513589.1

71.66b

  1. aSchmutz et al. [9]
  2. bAverage genome block coverage for the all accessions