Skip to main content

Table 2 Non-synonymous SNP markers in three genes correlated with fiber Length

From: Identification of candidate genes for fiber length quantitative trait loci through RNA-Seq and linkage and physical mapping in cotton

Gene Name SNP position based on CDS sequence Variant Amino acid Trait and Environmenta QTL name
CotAD_02556 241 A/C Lys- > Gln FL-08-A (0.180*) qFL-08A-c21–1
CotAD_28189 147 C/G Asp- > Glu No correlation with FL qFL-08A-c21–1
336 C/A Asp- > Glu No correlation with FL qFL-08A-c21–1
879 T/C Tyr- > His FL-07-A (0.189*) qFL-08A-c21–1
    FL-08-A (0.179*)  
CotAD_02795 156 A/G Asn- > Ser FL-09-A (0.211*) qFL-08A-c21–1
474 A/G Lys- > Arg FL-06-A (0.216**) qFL-08A-c21–1
    FL-07-A (0.281**)  
    FL-07-X (0.277**)  
    FL-07-W (0.277**)  
    FL-08-A (0.248*)  
    FL-09-A(0.311**)  
  1. Correction coefficients between trait and SNP loci was tested by SPSS software (*, P < 0.05, **, P < 0.01).
  2. a FL, fiber length; 06, 2006; 07, 2007; 08, 2008; 09, 2009; A, Anyang; X, Xinjiang; W, Wangjiang