Table 2 Categorization of genes with significantly increased expression (Bonferroni p < 0.05) in Z63, Z23 and VL1 strains in comparison to S288c, at T1 (5 g/L of CO2 released). Genes common to the three strains are underlined
MIPS functional category | Strain | ||
|---|---|---|---|
Z63 | Z23 | VL1 | |
electron transport and membrane-associated energy conservation | ATP20 COR1 COX1 COX13 COX3 COX5A COX6 COX7 CYB2 CYC1 CYC7 MCR1 NDE1 NDI1 QCR10 QCR2 QCR6 QCR7 QCR8 QCR9 RIP1 | COB COX1 COX3 COX5A CYB2 CYC1 CYC7 NDE1 NDI1 QCR8 QCR9 RIP1 | ATP20 COX1 COX13 COX5A COX6 COX7 CYB2 CYC1 CYC7 NDI1 QCR10 QCR7 QCR8 QCR9 RIP1 |
aerobic respiration | COR1 COX1 COX13 COX23 COX3 COX5A COX6 COX7 CYT1 ISF1 MAM33 MBR1 NDE1 NDI1 PET10 PET9 QCR10 QCR2 QCR6 QCR7 QCR8 QCR9 RIP1 | COB COX1 COX16 COX23 COX3 COX5A CYT1 MAM33 NDE1 NDI1 QCR8 QCR9 RIP1 YDR115W | COX1 COX13 COX16 COX23 COX5A COX6 COX7 CYT1 MRPL1 NDI1 QCR10 QCR7 QCR8 QCR9 RIP1 YDR115W |
tetracyclic and pentacyclic triterpenes (cholesterin, steroids and hopanoids) metabolism | ARE2 ERG1 ERG10 ERG13 ERG2 ERG27 ERG28 ERG5 ERG7 ERG9 HMG1 IDI1 MCR1 MVD1 NSG2 OSH6 | ARE2 ERG1 ERG13 ERG2 ERG28 ERG5 ERG9 HMG1 IDI1 MVD1 NSG2 OSH6 | ARE2 ERG1 ERG2 ERG27 ERG28 ERG5 ERG9 HMG1 IDI1 MVD1 NSG2 |
mitochondrion | CYB2 HSP10 MBR1 MDM35 MDV1 MNP1 MRM2 MRP2 MRP21 MRPL13 MRPL20 MRPL23 MRPL32 MRPL35 MRPL37 MRPL38 MRPL39 MRPL40 MRPL44 MRPL6 MRPL9 MRPS28 NDE1 NDI1 RSM25 TIM10 YMR31 | CYB2 HSP10 MNP1 MRP13 MRP2 MRP21 MRPL10 MRPL13 MRPL19 MRPL20 MRPL23 MRPL27 MRPL32 MRPL35 MRPL37 MRPL38 MRPL39 MRPL4 MRPL40 MRPL44 MRPL6 MRPL8 MRPL9 MRPS16 MRPS28 NAM9 NDE1 NDI1 RML2 RSM18 RSM19 RSM25 RSM26 TIM10 YDR115W YMR31 | CYB2 GET1 HSP10 MDM35 MDV1 MNP1 MRM2 MRP13 MRP2 MRP21 MRP49 MRPL1 MRPL10 MRPL13 MRPL20 MRPL23 MRPL27 MRPL32 MRPL35 MRPL36 MRPL37 MRPL38 MRPL39 MRPL40 MRPL44 MRPL49 MRPL6 MRPL9 MRPS16 MRPS28 NDI1 PET18 RSM18 RSM19 RSM25 RSM26 SAM37 TIM10 TIM12 TIM9 YDR115W YMR31 |
ribosomal proteins | MNP1 MRP13 MRP2 MRP21 MRPL10 MRPL13 MRPL19 MRPL20 MRPL23 MRPL27 MRPL32 MRPL35 MRPL37 MRPL38 MRPL39 MRPL4 MRPL40 MRPL44 MRPL6 MRPL8 MRPL9 MRPS16 MRPS28 NAM9 RML2 RPL19A RPL22A RPL34A RPL36A RPS10B RPS14B RPS17A RPS21B RPS24A RPS27A RSM18 RSM19 RSM25 RSM26 YDR115W YMR31 | MNP1 MRP13 MRP2 MRP21 MRP49 MRPL1 MRPL10 MRPL13 MRPL20 MRPL23 MRPL27 MRPL32 MRPL35 MRPL36 MRPL37 MRPL38 MRPL39 MRPL40 MRPL44 MRPL49 MRPL6 MRPL9 MRPS16 MRPS28 RPL11A RPL11B RPL18B RPL19A RPL19B RPL20B RPL22A RPL23A RPL26A RPL27A RPL30 RPL33B RPL34A RPL35B RPL36A RPL38 RPL40A RPL43B RPL9B RPP1A RPS10A RPS10B RPS14B RPS16A RPS17A RPS18B RPS21A RPS21B RPS24A RPS24B RPS25A RPS26A RPS27A RPS30A RPS30B RPS6B RPS8B RPS9A RSM18 RSM19 RSM25 RSM26 SWS2 YDR115W YMR31 | |
Fermentation | AAD16 AAD4 AAD6 ADH7 ALD2 MSC7 YPL088W | ||