Table 1 The function comparison between lncRNA-screen and other publically available software
| Â | lncRNA-screen | coRAL | RNA-CODE | lncRScan | iSeeRNA | CIRI | Annocript | LncRNA2Function |
|---|---|---|---|---|---|---|---|---|
Stand-alone server | √ | √ | √ | √ | √ | √ | √ |  |
Parallel computing | √ |  |  |  |  |  |  |  |
Online server |  |  |  |  | √ |  |  | √ |
Raw data support | √ |  | √ | √ | √ | √ | √ | √ |
Processed data support | √ |  |  |  |  | √ |  |  |
TCGA, GEO, SRA data automatic download | √ |  |  |  |  |  |  |  |
Known lncRNA identification | √ | √ | √ |  |  |  |  |  |
Novel lncRNA identification | √ | √ |  | √ | √ |  |  |  |
Differential expression analysis | √ | √ | √ | √ | √ | √ |  |  |
ChIP-seq histone mark integration | √ |  |  |  |  |  |  |  |
Hi-C data integration | √ |  |  |  |  |  |  |  |
lncRNA genome snapshots | √ |  |  |  |  |  |  |  |
Interactive lncRNA report | √ |  |  |  |  |  |  |  |