Table 2 List of features included in the final lncRNA feature report
Single Column | One column per group |
|---|---|
lncRNA ID | Mean FPKM above user-defined threshold |
Locus | Percentage of samples above FPKM threshold |
Number of Exons | H3K27ac peak enrichment score |
Gene Body Size | H3K4me3 peak enrichment score |
ORF Size | H3K4me1 peak enrichment score |
Coding Probability | Histone marks enrichment and FPKM cutoff combination |
Gencode Annotation | Differential expression analysis between groups |
RefSeq Annotation | Hi-C interaction between lncRNA and neighboring coding genes |
Ensembl Annotation | Â |
MiTranscriptome Annotation | Â |
SNPs annotation | Â |
Copy number gain/loss value | Â |