RNA sequencing and transcriptome arrays analyses show opposing results for alternative splicing in patient derived samples

Table 2 Some alternatively spliced genes involved in lung cancer identified in both platforms

Gene	Ensembl ID	Reference	Sites found by RNA-seq for		Sites found by HTA for		Concordant
Gene	Ensembl ID	Reference	exons	junctions	exons	junctions	Concordant
TP63	ENSG00000073282	Lo Iacono et al. [57]	6	10	2	27	No
TP73	ENSG00000078900	Lo Iacono et al. [57]	0	2	2	6	No
CD44	ENSG00000026508	Wang et al. [58]	34	32	19	43	No
HLA-G	ENSG00000204632	Yan et al. [59]	2	0	0	0	No
POSTN	ENSG00000133110	Morra et al. [60]	3	5	1	7	No
RUNX1	ENSG00000159216	Ito et al. [61]	8	2	18	13	Yes

ISSN: 1471-2164