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Table 3 Investigation of discordant isolates in this dataset (n = 107)

From: Comparison of molecular serotyping approaches of Streptococcus agalactiae from genomic sequences

SampleID cpsG-K Full CPS SNP-based SNPhits Original Results Retested
LAB_SEROTYPE G-KvsLAB CPSvsLAB SNPvsLAB Retested lab Retested WGS Resolved
PHEGBS0002 II II Serotype undetermined n = 42/44 IX FALSE FALSE NT NT   No
PHEGBS0007 Ia Ia,III Ia n = 44/44 IX FALSE NT FALSE Ia   Yes
PHEGBS0016 II II II n = 44/44 IX FALSE FALSE FALSE Ib II No
PHEGBS0017 V V,IX V n = 44/44 VI FALSE NT FALSE NT   No
PHEGBS0022 V V,IX V n = 44/44 VIII FALSE NT FALSE NT   No
PHEGBS0024 Ia Ia,III Ia n = 44/44 VIII FALSE NT FALSE Ia   Yes
PHEGBS0025 Ia Ia,III Ia n = 44/44 IX FALSE NT FALSE Ia   Yes
PHEGBS0026 Ia Ia,III Ia n = 44/44 VIII FALSE NT FALSE Ia   Yes
PHEGBS0027 Ia Ia,III Ia n = 44/44 VIII FALSE NT FALSE Ia   Yes
PHEGBS0028 II II II n = 44/44 VIII FALSE FALSE FALSE Ia II No
PHEGBS0029 Ib Ib Ib n = 44/44 VIII FALSE FALSE FALSE Ib   Yes
PHEGBS0030 V V,IX V n = 44/44 VIII FALSE NT FALSE NT   No
PHEGBS0033 V V,IX V n = 44/44 VI FALSE NT FALSE NT   No
PHEGBS0035 Ia Ia Serotype undetermined n = 0/44 NT FALSE FALSE NT Ia   Yes
PHEGBS0037 VI VI VI n = 44/44 III FALSE FALSE FALSE VI   Yes
PHEGBS0043 Ia Ia,III Ia n = 44/44 NT FALSE NT FALSE Ia   Yes
PHEGBS0070 Ia Ia,III Ia n = 44/44 NT FALSE NT FALSE Ia   Yes
PHEGBS0075 II II II n = 44/44 NT FALSE FALSE FALSE II   Yes
PHEGBS0082 V V,IX V n = 44/44 NT FALSE NT FALSE V   Yes
PHEGBS0084 IV IV IV n = 44/44 Ib FALSE FALSE FALSE IV   Yes
PHEGBS0086 Ia Ia,III Ia n = 44/44 NT FALSE NT FALSE Ia   Yes
PHEGBS0091 II II II n = 44/44 NT FALSE FALSE FALSE Ia II No
PHEGBS0098 V V,IX V n = 44/44 NT FALSE NT FALSE V   Yes
PHEGBS0103 IV IV IV n = 44/44 Ib FALSE FALSE FALSE IV   Yes
PHEGBS0134 Ia Ia,III Ia n = 44/44 IV FALSE NT FALSE Ia   Yes
PHEGBS0152 Ia Ia,III Ia n = 44/44 NT FALSE NT FALSE Ia   Yes
PHEGBS0157 IV IV,III IV n = 44/44 Ib FALSE NT FALSE IV   Yes
PHEGBS0163 II II Serotype undetermined n = 42/44 Ib FALSE FALSE NT Ia II No
PHEGBS0167 III III,Ia III n = 44/44 NT FALSE NT FALSE III   Yes
PHEGBS0176 III III,Ia Serotype undetermined n = 42/44 V FALSE NT NT NT   No
PHEGBS0195 Ia Ia,III Ia n = 44/44 III FALSE NT FALSE III III Yes
PHEGBS0196 Ia Ia,III Ia n = 44/44 Ib FALSE NT FALSE Ib Ib Yes
PHEGBS0198 Ib Ib Ib n = 44/44 V FALSE FALSE FALSE V V Yes
PHEGBS0200 V V,IX V n = 44/44 Ia FALSE NT FALSE Ia Ia Yes
PHEGBS0201 III III,Ia III n = 44/44 Ia FALSE NT FALSE Ia Ia Yes
PHEGBS0203 Ia Ia,III Ia n = 44/44 V FALSE NT FALSE V V Yes
PHEGBS0204 Ia Ia,III Ia n = 44/44 III FALSE NT FALSE III III Yes
PHEGBS0205 V V,IX V n = 44/44 III FALSE NT FALSE III III Yes
PHEGBS0208 IV IV IV n = 44/44 V FALSE FALSE FALSE V V Yes
PHEGBS0209 III III,Ia III n = 44/44 Ia FALSE NT FALSE Ia Ia Yes
PHEGBS0210 V V,IX V n = 44/44 Ia FALSE NT FALSE Ia Ia Yes
PHEGBS0211 Ia Ia,III Ia n = 44/44 III FALSE NT FALSE III III Yes
PHEGBS0212 Ia Ia,III Ia n = 44/44 III FALSE NT FALSE III III Yes
PHEGBS0215 III III,Ia III n = 44/44 Ia FALSE NT FALSE Ia Ia Yes
PHEGBS0216 III III,Ia Serotype undetermined n = 42/44 Ib FALSE NT NT Ib Ib Yes
PHEGBS0217 Ia Ia,III Ia n = 44/44 III FALSE NT FALSE III III Yes
PHEGBS0218 Ib Ib Ib n = 44/44 III FALSE FALSE FALSE III III Yes
PHEGBS0220 III III,Ia III n = 44/44 Ib FALSE NT FALSE Ib Ib Yes
PHEGBS0222 Ib Ib Ib n = 44/44 III FALSE FALSE FALSE III III Yes
PHEGBS0225 III III,Ia III n = 44/44 Ia FALSE NT FALSE Ia Ia Yes
PHEGBS0227 Ia Ia,III Ia n = 44/44 Ib FALSE NT FALSE Ib Ib Yes
PHEGBS0228 III III,Ia III n = 44/44 Ia FALSE NT FALSE Ia Ia Yes
PHEGBS0229 Ib Ib Ib n = 44/44 V FALSE FALSE FALSE V V Yes
PHEGBS0231 V V,IX V n = 44/44 III FALSE NT FALSE III III Yes
PHEGBS0232 Ia Ia,III Ia n = 44/44 Ib FALSE NT FALSE Ia   Yes
PHEGBS0233 IV IV IV n = 44/44 III FALSE FALSE FALSE III III Yes
PHEGBS0236 III III,Ia III n = 44/44 Ib FALSE NT FALSE Ib Ib Yes
PHEGBS0238 Ib Ib Ib n = 44/44 III FALSE FALSE FALSE III III Yes
PHEGBS0240 III III,Ia III n = 44/44 Ia FALSE NT FALSE Ia Ia Yes
PHEGBS0241 III III,Ia III n = 44/44 VI FALSE NT FALSE VI VI Yes
PHEGBS0242 Ia Ia,III Ia n = 44/44 III FALSE NT FALSE III III Yes
PHEGBS0264 II II II n = 44/44 NT FALSE FALSE FALSE NT II No
PHEGBS0266 IV IV IV n = 44/44 Ib FALSE FALSE FALSE NT IV No
PHEGBS0271 II II II n = 44/44 NT FALSE FALSE FALSE II   Yes
PHEGBS0313 IV IV IV n = 44/44 Ib FALSE FALSE FALSE IV   Yes
PHEGBS0327 IV IV IV n = 44/44 Ib FALSE FALSE FALSE IV   Yes
PHEGBS0352 II II II n = 44/44 Ib FALSE FALSE FALSE II   Yes
PHEGBS0373 V V,IX V n = 44/44 NT FALSE NT FALSE NT V No
PHEGBS0390 II II II n = 44/44 V FALSE FALSE FALSE V II No
PHEGBS0394 II II II n = 44/44 NT FALSE FALSE FALSE II   Yes
PHEGBS0398 II II II n = 44/44 NT FALSE FALSE FALSE V II No
PHEGBS0404 II II II n = 44/44 NT FALSE FALSE FALSE NT II No
PHEGBS0432 II II II n = 44/44 V FALSE FALSE FALSE NT   No
PHEGBS0433 IV IV IV n = 44/44 Ib FALSE FALSE FALSE IV   Yes
PHEGBS0460 Ia Ia,III Ia n = 44/44 III FALSE NT FALSE NT   No
PHEGBS0492 III III,Ia III n = 44/44 NT FALSE NT FALSE III   Yes
PHEGBS0520 V V,IX V n = 44/44 NT FALSE NT FALSE NT   No
PHEGBS0554 II II II n = 44/44 NT FALSE FALSE FALSE NT   No
PHEGBS0568 II II II n = 44/44 Ia FALSE FALSE FALSE NT   No
PHEGBS0586 II II II n = 44/44 V FALSE FALSE FALSE NT   No
PHEGBS0600 II II Serotype undetermined n = 41/44 III FALSE FALSE NT NT   No
PHEGBS0603 III III,Ia III n = 44/44 NT FALSE NT FALSE NT   No
PHEGBS0607 VII VII,IX VII n = 44/44 III FALSE NT FALSE III   No
PHEGBS0610 III III,Ia III n = 44/44 Ia FALSE NT FALSE Ia   No
PHEGBS0611 Ia Ia,III Ia n = 44/44 III FALSE NT FALSE III   No
PHEGBS0615 Ia Ia,III Ia n = 44/44 V FALSE NT FALSE Ia   Yes
PHEGBS0620 Ia Ia,III Serotype undetermined n = 41/44 III FALSE NT NT III III Yes
PHEGBS0627 II II II n = 44/44 Ib FALSE FALSE FALSE Ia   No
PHEGBS0640 III III,Ia III n = 44/44 VIII FALSE NT FALSE III   Yes
PHEGBS0641 III III,Ia III n = 44/44 NT FALSE NT FALSE III   Yes
PHEGBS0642 III III,Ia III n = 44/44 Ia FALSE NT FALSE III   Yes
PHEGBS0643 III III,Ia III n = 44/44 Ia FALSE NT FALSE Ia   No
PHEGBS0644 III III,Ia III n = 44/44 NT FALSE NT FALSE III   Yes
PHEGBS0671 IV IV Serotype undetermined n = 38/44 Ia FALSE FALSE NT Ia IV No
PHEGBS0728 II II II n = 44/44 NT FALSE FALSE FALSE NT   No
PHEGBS0737 II II II n = 44/44 V FALSE FALSE FALSE V   No
PHEGBS0738 V V,IX Serotype undetermined n = 42/44 Ia FALSE NT NT V   Yes
PHEGBS0761 V V,IX V n = 44/44 NT FALSE NT FALSE V   Yes
PHEGBS0772 Ia Ia,III Serotype undetermined n = 38/44 NT FALSE NT NT Ia   Yes
PHEGBS0821 VI VI VI n = 44/44 NT FALSE FALSE FALSE VI   Yes
PHEGBS0822 Ib Ib Ib n = 44/44 NT FALSE FALSE FALSE Ib   Yes
PHEGBS0823 Ia Ia,III III n = 44/44 NT FALSE NT FALSE NT   No
PHEGBS0824 Ib Ib Ib n = 44/44 Ia FALSE FALSE FALSE Ia Ib No
PHEGBS0825 VII VII,IX VII n = 44/44 NT FALSE NT FALSE VII   Yes
PHEGBS0826 VI VI VI n = 44/44 Ia FALSE FALSE FALSE VI   Yes
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