Table 3 Investigation of discordant isolates in this dataset (n = 107)
From: Comparison of molecular serotyping approaches of Streptococcus agalactiae from genomic sequences
SampleID | cpsG-K | Full CPS | SNP-based | SNPhits | Original Results | Retested | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
LAB_SEROTYPE | G-KvsLAB | CPSvsLAB | SNPvsLAB | Retested lab | Retested WGS | Resolved | |||||
PHEGBS0002 | II | II | Serotype undetermined | n = 42/44 | IX | FALSE | FALSE | NT | NT | No | |
PHEGBS0007 | Ia | Ia,III | Ia | n = 44/44 | IX | FALSE | NT | FALSE | Ia | Yes | |
PHEGBS0016 | II | II | II | n = 44/44 | IX | FALSE | FALSE | FALSE | Ib | II | No |
PHEGBS0017 | V | V,IX | V | n = 44/44 | VI | FALSE | NT | FALSE | NT | No | |
PHEGBS0022 | V | V,IX | V | n = 44/44 | VIII | FALSE | NT | FALSE | NT | No | |
PHEGBS0024 | Ia | Ia,III | Ia | n = 44/44 | VIII | FALSE | NT | FALSE | Ia | Yes | |
PHEGBS0025 | Ia | Ia,III | Ia | n = 44/44 | IX | FALSE | NT | FALSE | Ia | Yes | |
PHEGBS0026 | Ia | Ia,III | Ia | n = 44/44 | VIII | FALSE | NT | FALSE | Ia | Yes | |
PHEGBS0027 | Ia | Ia,III | Ia | n = 44/44 | VIII | FALSE | NT | FALSE | Ia | Yes | |
PHEGBS0028 | II | II | II | n = 44/44 | VIII | FALSE | FALSE | FALSE | Ia | II | No |
PHEGBS0029 | Ib | Ib | Ib | n = 44/44 | VIII | FALSE | FALSE | FALSE | Ib | Yes | |
PHEGBS0030 | V | V,IX | V | n = 44/44 | VIII | FALSE | NT | FALSE | NT | No | |
PHEGBS0033 | V | V,IX | V | n = 44/44 | VI | FALSE | NT | FALSE | NT | No | |
PHEGBS0035 | Ia | Ia | Serotype undetermined | n = 0/44 | NT | FALSE | FALSE | NT | Ia | Yes | |
PHEGBS0037 | VI | VI | VI | n = 44/44 | III | FALSE | FALSE | FALSE | VI | Yes | |
PHEGBS0043 | Ia | Ia,III | Ia | n = 44/44 | NT | FALSE | NT | FALSE | Ia | Yes | |
PHEGBS0070 | Ia | Ia,III | Ia | n = 44/44 | NT | FALSE | NT | FALSE | Ia | Yes | |
PHEGBS0075 | II | II | II | n = 44/44 | NT | FALSE | FALSE | FALSE | II | Yes | |
PHEGBS0082 | V | V,IX | V | n = 44/44 | NT | FALSE | NT | FALSE | V | Yes | |
PHEGBS0084 | IV | IV | IV | n = 44/44 | Ib | FALSE | FALSE | FALSE | IV | Yes | |
PHEGBS0086 | Ia | Ia,III | Ia | n = 44/44 | NT | FALSE | NT | FALSE | Ia | Yes | |
PHEGBS0091 | II | II | II | n = 44/44 | NT | FALSE | FALSE | FALSE | Ia | II | No |
PHEGBS0098 | V | V,IX | V | n = 44/44 | NT | FALSE | NT | FALSE | V | Yes | |
PHEGBS0103 | IV | IV | IV | n = 44/44 | Ib | FALSE | FALSE | FALSE | IV | Yes | |
PHEGBS0134 | Ia | Ia,III | Ia | n = 44/44 | IV | FALSE | NT | FALSE | Ia | Yes | |
PHEGBS0152 | Ia | Ia,III | Ia | n = 44/44 | NT | FALSE | NT | FALSE | Ia | Yes | |
PHEGBS0157 | IV | IV,III | IV | n = 44/44 | Ib | FALSE | NT | FALSE | IV | Yes | |
PHEGBS0163 | II | II | Serotype undetermined | n = 42/44 | Ib | FALSE | FALSE | NT | Ia | II | No |
PHEGBS0167 | III | III,Ia | III | n = 44/44 | NT | FALSE | NT | FALSE | III | Yes | |
PHEGBS0176 | III | III,Ia | Serotype undetermined | n = 42/44 | V | FALSE | NT | NT | NT | No | |
PHEGBS0195 | Ia | Ia,III | Ia | n = 44/44 | III | FALSE | NT | FALSE | III | III | Yes |
PHEGBS0196 | Ia | Ia,III | Ia | n = 44/44 | Ib | FALSE | NT | FALSE | Ib | Ib | Yes |
PHEGBS0198 | Ib | Ib | Ib | n = 44/44 | V | FALSE | FALSE | FALSE | V | V | Yes |
PHEGBS0200 | V | V,IX | V | n = 44/44 | Ia | FALSE | NT | FALSE | Ia | Ia | Yes |
PHEGBS0201 | III | III,Ia | III | n = 44/44 | Ia | FALSE | NT | FALSE | Ia | Ia | Yes |
PHEGBS0203 | Ia | Ia,III | Ia | n = 44/44 | V | FALSE | NT | FALSE | V | V | Yes |
PHEGBS0204 | Ia | Ia,III | Ia | n = 44/44 | III | FALSE | NT | FALSE | III | III | Yes |
PHEGBS0205 | V | V,IX | V | n = 44/44 | III | FALSE | NT | FALSE | III | III | Yes |
PHEGBS0208 | IV | IV | IV | n = 44/44 | V | FALSE | FALSE | FALSE | V | V | Yes |
PHEGBS0209 | III | III,Ia | III | n = 44/44 | Ia | FALSE | NT | FALSE | Ia | Ia | Yes |
PHEGBS0210 | V | V,IX | V | n = 44/44 | Ia | FALSE | NT | FALSE | Ia | Ia | Yes |
PHEGBS0211 | Ia | Ia,III | Ia | n = 44/44 | III | FALSE | NT | FALSE | III | III | Yes |
PHEGBS0212 | Ia | Ia,III | Ia | n = 44/44 | III | FALSE | NT | FALSE | III | III | Yes |
PHEGBS0215 | III | III,Ia | III | n = 44/44 | Ia | FALSE | NT | FALSE | Ia | Ia | Yes |
PHEGBS0216 | III | III,Ia | Serotype undetermined | n = 42/44 | Ib | FALSE | NT | NT | Ib | Ib | Yes |
PHEGBS0217 | Ia | Ia,III | Ia | n = 44/44 | III | FALSE | NT | FALSE | III | III | Yes |
PHEGBS0218 | Ib | Ib | Ib | n = 44/44 | III | FALSE | FALSE | FALSE | III | III | Yes |
PHEGBS0220 | III | III,Ia | III | n = 44/44 | Ib | FALSE | NT | FALSE | Ib | Ib | Yes |
PHEGBS0222 | Ib | Ib | Ib | n = 44/44 | III | FALSE | FALSE | FALSE | III | III | Yes |
PHEGBS0225 | III | III,Ia | III | n = 44/44 | Ia | FALSE | NT | FALSE | Ia | Ia | Yes |
PHEGBS0227 | Ia | Ia,III | Ia | n = 44/44 | Ib | FALSE | NT | FALSE | Ib | Ib | Yes |
PHEGBS0228 | III | III,Ia | III | n = 44/44 | Ia | FALSE | NT | FALSE | Ia | Ia | Yes |
PHEGBS0229 | Ib | Ib | Ib | n = 44/44 | V | FALSE | FALSE | FALSE | V | V | Yes |
PHEGBS0231 | V | V,IX | V | n = 44/44 | III | FALSE | NT | FALSE | III | III | Yes |
PHEGBS0232 | Ia | Ia,III | Ia | n = 44/44 | Ib | FALSE | NT | FALSE | Ia | Yes | |
PHEGBS0233 | IV | IV | IV | n = 44/44 | III | FALSE | FALSE | FALSE | III | III | Yes |
PHEGBS0236 | III | III,Ia | III | n = 44/44 | Ib | FALSE | NT | FALSE | Ib | Ib | Yes |
PHEGBS0238 | Ib | Ib | Ib | n = 44/44 | III | FALSE | FALSE | FALSE | III | III | Yes |
PHEGBS0240 | III | III,Ia | III | n = 44/44 | Ia | FALSE | NT | FALSE | Ia | Ia | Yes |
PHEGBS0241 | III | III,Ia | III | n = 44/44 | VI | FALSE | NT | FALSE | VI | VI | Yes |
PHEGBS0242 | Ia | Ia,III | Ia | n = 44/44 | III | FALSE | NT | FALSE | III | III | Yes |
PHEGBS0264 | II | II | II | n = 44/44 | NT | FALSE | FALSE | FALSE | NT | II | No |
PHEGBS0266 | IV | IV | IV | n = 44/44 | Ib | FALSE | FALSE | FALSE | NT | IV | No |
PHEGBS0271 | II | II | II | n = 44/44 | NT | FALSE | FALSE | FALSE | II | Yes | |
PHEGBS0313 | IV | IV | IV | n = 44/44 | Ib | FALSE | FALSE | FALSE | IV | Yes | |
PHEGBS0327 | IV | IV | IV | n = 44/44 | Ib | FALSE | FALSE | FALSE | IV | Yes | |
PHEGBS0352 | II | II | II | n = 44/44 | Ib | FALSE | FALSE | FALSE | II | Yes | |
PHEGBS0373 | V | V,IX | V | n = 44/44 | NT | FALSE | NT | FALSE | NT | V | No |
PHEGBS0390 | II | II | II | n = 44/44 | V | FALSE | FALSE | FALSE | V | II | No |
PHEGBS0394 | II | II | II | n = 44/44 | NT | FALSE | FALSE | FALSE | II | Yes | |
PHEGBS0398 | II | II | II | n = 44/44 | NT | FALSE | FALSE | FALSE | V | II | No |
PHEGBS0404 | II | II | II | n = 44/44 | NT | FALSE | FALSE | FALSE | NT | II | No |
PHEGBS0432 | II | II | II | n = 44/44 | V | FALSE | FALSE | FALSE | NT | No | |
PHEGBS0433 | IV | IV | IV | n = 44/44 | Ib | FALSE | FALSE | FALSE | IV | Yes | |
PHEGBS0460 | Ia | Ia,III | Ia | n = 44/44 | III | FALSE | NT | FALSE | NT | No | |
PHEGBS0492 | III | III,Ia | III | n = 44/44 | NT | FALSE | NT | FALSE | III | Yes | |
PHEGBS0520 | V | V,IX | V | n = 44/44 | NT | FALSE | NT | FALSE | NT | No | |
PHEGBS0554 | II | II | II | n = 44/44 | NT | FALSE | FALSE | FALSE | NT | No | |
PHEGBS0568 | II | II | II | n = 44/44 | Ia | FALSE | FALSE | FALSE | NT | No | |
PHEGBS0586 | II | II | II | n = 44/44 | V | FALSE | FALSE | FALSE | NT | No | |
PHEGBS0600 | II | II | Serotype undetermined | n = 41/44 | III | FALSE | FALSE | NT | NT | No | |
PHEGBS0603 | III | III,Ia | III | n = 44/44 | NT | FALSE | NT | FALSE | NT | No | |
PHEGBS0607 | VII | VII,IX | VII | n = 44/44 | III | FALSE | NT | FALSE | III | No | |
PHEGBS0610 | III | III,Ia | III | n = 44/44 | Ia | FALSE | NT | FALSE | Ia | No | |
PHEGBS0611 | Ia | Ia,III | Ia | n = 44/44 | III | FALSE | NT | FALSE | III | No | |
PHEGBS0615 | Ia | Ia,III | Ia | n = 44/44 | V | FALSE | NT | FALSE | Ia | Yes | |
PHEGBS0620 | Ia | Ia,III | Serotype undetermined | n = 41/44 | III | FALSE | NT | NT | III | III | Yes |
PHEGBS0627 | II | II | II | n = 44/44 | Ib | FALSE | FALSE | FALSE | Ia | No | |
PHEGBS0640 | III | III,Ia | III | n = 44/44 | VIII | FALSE | NT | FALSE | III | Yes | |
PHEGBS0641 | III | III,Ia | III | n = 44/44 | NT | FALSE | NT | FALSE | III | Yes | |
PHEGBS0642 | III | III,Ia | III | n = 44/44 | Ia | FALSE | NT | FALSE | III | Yes | |
PHEGBS0643 | III | III,Ia | III | n = 44/44 | Ia | FALSE | NT | FALSE | Ia | No | |
PHEGBS0644 | III | III,Ia | III | n = 44/44 | NT | FALSE | NT | FALSE | III | Yes | |
PHEGBS0671 | IV | IV | Serotype undetermined | n = 38/44 | Ia | FALSE | FALSE | NT | Ia | IV | No |
PHEGBS0728 | II | II | II | n = 44/44 | NT | FALSE | FALSE | FALSE | NT | No | |
PHEGBS0737 | II | II | II | n = 44/44 | V | FALSE | FALSE | FALSE | V | No | |
PHEGBS0738 | V | V,IX | Serotype undetermined | n = 42/44 | Ia | FALSE | NT | NT | V | Yes | |
PHEGBS0761 | V | V,IX | V | n = 44/44 | NT | FALSE | NT | FALSE | V | Yes | |
PHEGBS0772 | Ia | Ia,III | Serotype undetermined | n = 38/44 | NT | FALSE | NT | NT | Ia | Yes | |
PHEGBS0821 | VI | VI | VI | n = 44/44 | NT | FALSE | FALSE | FALSE | VI | Yes | |
PHEGBS0822 | Ib | Ib | Ib | n = 44/44 | NT | FALSE | FALSE | FALSE | Ib | Yes | |
PHEGBS0823 | Ia | Ia,III | III | n = 44/44 | NT | FALSE | NT | FALSE | NT | No | |
PHEGBS0824 | Ib | Ib | Ib | n = 44/44 | Ia | FALSE | FALSE | FALSE | Ia | Ib | No |
PHEGBS0825 | VII | VII,IX | VII | n = 44/44 | NT | FALSE | NT | FALSE | VII | Yes | |
PHEGBS0826 | VI | VI | VI | n = 44/44 | Ia | FALSE | FALSE | FALSE | VI | Yes | |