Dissection of additive, dominance, and imprinting effects for production and reproduction traits in Holstein cattle

Table 2 Top two SNPs associated with milk yield near the RUNX2 gene

SNP	Chr	Position	MAF	Model	β_A (SE)	P-value	β_D (SE)	P-value	β_I (SE)	P-value
Hapmap48809-BTA-55698	23	17,275,448	0.15	Two-step	153.4 (33.0)	3.33 × 10⁻⁶	197.1 (37.6)	1.56 × 10⁻⁷	−3.64 (18.0)	0.84
				A	223.6 (51.8)	1.57 × 10⁻⁵	255.2 (44.7)	1.17 × 10⁻⁸	−1.54 (23.8)	0.95
				A + D + I	212.7 (51.6)	3.82 × 10⁻⁵	241.7 (45.3)	9.54 × 10⁻⁸	−0.52 (25.5)	0.98
BovineHD2300004730	23	18,600,456	0.10	Two-step	207.3 (47.6)	1.31 × 10⁻⁵	273.5 (52.1)	1.54 × 10⁻⁷	10.31 (21.3)	0.63
				A	206.2 (67.6)	2.29 × 10⁻³	353.6 (62.3)	1.43 × 10⁻⁸	−3.43 (28.8)	0.91
				A + D + I	200.6 (67.5)	2.96 × 10⁻³	340.4 (62.9)	6.33 × 10⁻⁸	7.52 (30.8)	0.81

Chr chromosome, MAF minor allele frequency, β regression coefficient, SE standard error

ISSN: 1471-2164