Table 1 Summary of sequencing data in the study
Sample name | Duplicates | Raw reads | Clean reads | Clean base (Gb) | Q20 (%) | Q30 (%) | Mapped (%) |
|---|---|---|---|---|---|---|---|
I-1 | a | 43,959,191 | 42,775,222 | 6.4 | 96.48 | 89.53 | 88.26 |
b | 46,024,032 | 44,762,682 | 6.7 | 96.26 | 89.13 | 90.09 | |
c | 42,180,866 | 41,017,933 | 6.2 | 96.44 | 89.39 | 90.27 | |
I-3 | a | 43,175,970 | 42,015,916 | 6.3 | 96.22 | 88.98 | 90.80 |
b | 45,504,613 | 44,285,127 | 6.6 | 96.27 | 89.02 | 88.60 | |
c | 44,279,976 | 43,069,779 | 6.5 | 96.21 | 88.92 | 89.89 | |
I-5 | a | 42,440,949 | 41,273,811 | 6.2 | 96.23 | 89.1 | 90.55 |
b | 42,743,916 | 41,555,617 | 6.2 | 96.24 | 89.15 | 91.30 | |
c | 44,936,847 | 43,704,884 | 6.6 | 96.18 | 89.03 | 88.96 | |
I-7 | a | 42,302,608 | 41,142,107 | 6.2 | 96.32 | 89.28 | 89.19 |
b | 44,763,427 | 43,571,261 | 6.5 | 96.3 | 89.19 | 89.72 | |
c | 43,916,414 | 42,749,930 | 6.4 | 96.34 | 89.29 | 91.32 | |
II-1 | a | 45,999,850 | 44,785,102 | 6.7 | 96.22 | 89.01 | 87.18 |
b | 42,941,167 | 41,751,223 | 6.3 | 96.15 | 88.90 | 89.59 | |
c | 44,268,235 | 43,109,075 | 6.5 | 96.38 | 89.33 | 89.47 | |
II-3 | a | 46,881,460 | 45,686,432 | 6.9 | 96.37 | 89.37 | 91.09 |
b | 43,359,534 | 42,206,217 | 6.3 | 96.33 | 89.25 | 87.24 | |
c | 42,641,431 | 41,496,401 | 6.2 | 96.37 | 89.37 | 89.72 | |
II-5 | a | 43,358,527 | 42,183,431 | 6.4 | 96.28 | 89.16 | 89.88 |
b | 43,539,923 | 42,358,196 | 6.4 | 96.27 | 89.11 | 90.86 | |
c | 44,335,544 | 43,109,720 | 6.5 | 96.13 | 88.86 | 87.38 | |
II-7 | a | 45,463,769 | 44,240,714 | 6.6 | 96.23 | 89.2 | 89.75 |
b | 44,831,490 | 43,616,013 | 6.5 | 96.25 | 89.2 | 89.83 | |
c | 43,771,968 | 42,577,304 | 6.4 | 96.24 | 89.2 | 90.88 | |
C-1 | a | 43,428,497 | 42,233,801 | 6.3 | 96.13 | 88.9 | 87.67 |
b | 45,897,450 | 44,670,684 | 6.7 | 96.19 | 89.02 | 89.35 | |
c | 43,842,260 | 42,652,596 | 6.4 | 96.32 | 89.27 | 89.79 | |
C-3 | a | 45,354,222 | 44,137,729 | 6.6 | 96.02 | 88.58 | 90.71 |
b | 42,743,245 | 41,573,966 | 6.2 | 96.22 | 89.07 | 87.26 | |
c | 44,613,776 | 43,405,844 | 6.5 | 96.13 | 88.83 | 89.09 | |
C-5 | a | 44,397,927 | 43,195,411 | 6.5 | 96.21 | 89.14 | 89.99 |
b | 43,318,566 | 42,125,322 | 6.3 | 96.32 | 89.42 | 91.24 | |
c | 45,299,655 | 44,111,640 | 6.6 | 96.28 | 89.2 | 88.44 | |
C-7 | a | 44,182,777 | 42,985,305 | 6.4 | 95.72 | 87.96 | 89.51 |
b | 43,638,964 | 42,449,707 | 6.4 | 95.79 | 88.08 | 89.98 | |
c | 45,255,896 | 44,734,541 | 6.7 | 95.6 | 87.67 | 91.07 |