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Table 2 Enriched gene ontology terms identified from the 2496 differentially expressed genes in the R- and/or S-NILs during 12 h after aphid infestation

From: Transcriptomic dynamics in soybean near-isogenic lines differing in alleles for an aphid resistance gene, following infestation by soybean aphid biotype 2

Class GO accession Term typea Term description Query item Query total Background item Background total FDR
Common GO:0005975 P Carbohydrate metabolic process 61 622 1443 29,501 0.000
GO:0055114 P Oxidation reduction 80 622 2408 29,501 0.018
GO:0016052 P Carbohydrate catabolic process 14 622 195 29,501 0.028
GO:0016701 F Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 14 622 108 29,501 0.000
GO:0016491 F Oxidoreductase activity 98 622 2744 29,501 0.000
GO:0016703 F Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) 6 622 11 29,501 0.000
GO:0010277 F Chlorophyllide a oxygenase activity 6 622 11 29,501 0.000
GO:0003682 F Chromatin binding 32 622 605 29,501 0.001
GO:0051537 F 2 iron, 2 sulfur cluster binding 6 622 18 29,501 0.001
GO:0016798 F Hydrolase activity, acting on glycosyl bonds 34 622 759 29,501 0.005
GO:0004497 F Monooxygenase activity 8 622 64 29,501 0.007
GO:0004553 F Hydrolase activity, hydrolyzing O-glycosyl compounds 32 622 726 29,501 0.007
GO:0051536 F Iron-sulfur cluster binding 10 622 102 29,501 0.007
GO:0051540 F Metal cluster binding 10 622 102 29,501 0.007
GO:0016903 F Oxidoreductase activity, acting on the aldehyde or oxo group of donors 8 622 66 29,501 0.008
GO:0004650 F Polygalacturonase activity 9 622 112 29,501 0.045
Common GO:0034357 C Photosynthetic membrane 11 622 117 29,501 0.004
GO:0009521 C Photosystem 11 622 113 29,501 0.004
GO:0009579 C Thylakoid 11 622 126 29,501 0.005
GO:0016020 C Membrane 103 622 3518 29,501 0.010
GO:0044436 C Thylakoid part 7 622 59 29,501 0.010
GO:0044425 C Membrane part 59 622 1801 29,501 0.013
GO:0019898 C Extrinsic to membrane 6 622 50 29,501 0.016
GO:0009522 C Photosystem I 5 622 35 29,501 0.018
GO:0009654 C Oxygen evolving complex 5 622 42 29,501 0.034
GO:0031224 C Intrinsic to membrane 47 622 1453 29,501 0.035
R-specific GO:0055114 P Oxidation reduction 93 740 2408 29,501 0.009
GO:0006629 P Lipid metabolic process 49 740 1024 29,501 0.009
GO:0006633 P Fatty acid biosynthetic process 12 740 108 29,501 0.009
GO:0006631 P Fatty acid metabolic process 13 740 130 29,501 0.009
GO:0032787 P Monocarboxylic acid metabolic process 15 740 176 29,501 0.011
GO:0043436 P Oxoacid metabolic process 31 740 580 29,501 0.011
GO:0006082 P Organic acid metabolic process 31 740 581 29,501 0.011
GO:0019752 P Carboxylic acid metabolic process 31 740 580 29,501 0.011
GO:0042180 P Cellular ketone metabolic process 31 740 584 29,501 0.011
GO:0008610 P Lipid biosynthetic process 25 740 470 29,501 0.040
GO:0008152 P Metabolic process 401 740 14,225 29,501 0.046
GO:0016491 F Oxidoreductase activity 103 740 2744 29,501 0.023
S-specific GO:0015979 P Photosynthesis 6 149 143 29,501 0.029
GO:0034357 C Photosynthetic membrane 6 149 117 29,501 0.001
GO:0009521 C Photosystem 6 149 113 29,501 0.001
GO:0009579 C Thylakoid 6 149 126 29,501 0.001
  1. aP, biological process; F, molecular function; C, cellular component