Relatively frequent switching of transcription start sites during cerebellar development

BMC Genomics

Table 1 Comparison of TSS switching events during cerebellar development with other FANTOM5 datasets

Time Series	Germ layer	TP#	Switching#	Gene#	%	Non-Xover	%	Xover	%
Cerebellar development	Ectoderm	12	48,489	5433	21.6	38,722	79.9	9767	20.1
Human iPS to neuron (wt) 1	Ectoderm	4	45,069	6692	26.5	41,302	91.6	3767	8.4
Trachea epithelia differentiation	Endoderm	19	8389	2458	9.8	6112	72.9	2277	27.1
Adipocyte differentiation	Mesoderm	16	66,087	5996	23.8	57,857	87.5	8230	12.5
Epithelial to mesenchymal	Mesoderm	21	132,661	7004	27.8	109,252	82.4	23,409	17.6
BMM TB activation IL13	Mesoderm	11	825	527	2.1	564	68.4	261	31.6
AoSMC response to IL1b	Mesoderm	10	192	159	0.6	129	67.2	63	32.8
Macrophage response to LPS	Mesoderm	23	32,234	4557	18.1	22,239	69.0	9995	31.0
ES to cardiomyocyte	Mesoderm	13	189	163	0.6	100	52.9	89	47.1
Myoblast to myotube	Mesoderm	9	21,912	4249	16.9	18,735	85.5	3177	14.5

TP# number of time points in the time series, Switching # total number of TSS switching events found in the dataset, Gene # total number of genes with at least one TSS switching event, Column 6: % TSS switching genes over all 25,207 genes, Non-Xover total number of non-crossover TSS switching events found in the dataset, Column 8: % percentage of non-crossover events over all switching events, Xover total number of crossover TSS switching events found in the dataset, Column 10: % percentage of crossover events over all switching events

ISSN: 1471-2164