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Table 1 Comparison of TSS switching events during cerebellar development with other FANTOM5 datasets

From: Relatively frequent switching of transcription start sites during cerebellar development

Time Series Germ layer TP# Switching# Gene# % Non-Xover % Xover %
Cerebellar development Ectoderm 12 48,489 5433 21.6 38,722 79.9 9767 20.1
Human iPS to neuron (wt) 1 Ectoderm 4 45,069 6692 26.5 41,302 91.6 3767 8.4
Trachea epithelia differentiation Endoderm 19 8389 2458 9.8 6112 72.9 2277 27.1
Adipocyte differentiation Mesoderm 16 66,087 5996 23.8 57,857 87.5 8230 12.5
Epithelial to mesenchymal Mesoderm 21 132,661 7004 27.8 109,252 82.4 23,409 17.6
BMM TB activation IL13 Mesoderm 11 825 527 2.1 564 68.4 261 31.6
AoSMC response to IL1b Mesoderm 10 192 159 0.6 129 67.2 63 32.8
Macrophage response to LPS Mesoderm 23 32,234 4557 18.1 22,239 69.0 9995 31.0
ES to cardiomyocyte Mesoderm 13 189 163 0.6 100 52.9 89 47.1
Myoblast to myotube Mesoderm 9 21,912 4249 16.9 18,735 85.5 3177 14.5
  1. TP# number of time points in the time series, Switching # total number of TSS switching events found in the dataset, Gene # total number of genes with at least one TSS switching event, Column 6: % TSS switching genes over all 25,207 genes, Non-Xover total number of non-crossover TSS switching events found in the dataset, Column 8: % percentage of non-crossover events over all switching events, Xover total number of crossover TSS switching events found in the dataset, Column 10: % percentage of crossover events over all switching events