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Table 3 List of genes of the compensatory muscle growth signature involved in ribosome biogenesis

From: Global gene expression in muscle from fasted/refed trout reveals up-regulation of genes promoting myofibre hypertrophy but not myofibre production

ID

Gene Name

ID

Gene Name

C1D

C1D nuclear receptor co-repressor;

AATF

apoptosis antagonizing transcription factor

DDX51

DEAD (Asp-Glu-Ala-Asp) box polypeptide 51

BRIX1

brix domain containing 2

DDX56

DEAD (Asp-Glu-Ala-Asp) box polypeptide 56

RPF1

brix domain containing 5

DIMT1L

DIM1 dimethyladenosine transferase 1-like

BYSL

bystin-like

EBNA1BP2

EBNA1 binding protein 2

EIF6

eukaryotic translation initiation factor 6

FCF1

FCF1 small subunit (SSU) processome component homolog

EXOSC10

exosome component 10

FTSJ3

FtsJ homolog 3

EXOSC2

exosome component 2

HEATR1

HEAT repeat containing 1

EXOSC3

exosome component 3

IMP3

IMP3, U3 small nucleolar ribonucleoprotein, homolog

EXOSC4

exosome component 4

IMP4

IMP4, U3 small nucleolar ribonucleoprotein, homolog

EXOSC7

exosome component 7

KRR1

KRR1, small subunit (SSU) processome component, homolog)

EXOSC8

exosome component 8

MPHOSPH10

M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein

FBL

fibrillarin

MINA

MYC induced nuclear antigen

GNL3L

guanine nucleotide binding protein-like 3 (nucleolar)-like

NHP2L1

NHP2 non-histone chromosome protein 2-like 1

MRTO4

mRNA turnover 4 homolog

NOP14

NOP14 nucleolar protein homolog

NIP7

nuclear import 7 homolog

NOP2

NOP2 nucleolar protein homolog

NPM1

nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin)

NOP56

NOP56 ribonucleoprotein homolog

PES1

pescadillo homolog 1, containing BRCT domain

NOP58

NOP58 ribonucleoprotein homolog

POP4

processing of precursor 4, ribonuclease P/MRP subunit

SDAD1

SDA1 domain containing 1

PDCD11

programmed cell death 11

TSR2

TSR2, 20S rRNA accumulation, homolog

PA2G4

proliferation-associated 2G4, 38 kDa;

UTP11L

UTP11-like, U3 small nucleolar ribonucleoprotein

PIN4

protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)

UTP14A

UTP14, U3 small nucleolar ribonucleoprotein, homolog A

RRP1

ribosomal RNA processing 1 homolog

UTP15

UTP15, U3 small nucleolar ribonucleoprotein, homolog

RRP1B

ribosomal RNA processing 1 homolog B

UTP18

UTP18, small subunit (SSU) processome component, homolog

RRP8

ribosomal RNA processing 8, methyltransferase, homolog

UTP23

UTP23, small subunit (SSU) processome component, homolog

RRP9

ribosomal RNA processing 9, small subunit (SSU) processome component

UTP6

UTP6, small subunit (SSU) processome component, homolog

RPL5

ribosomal protein L5

WDR12

WD repeat domain 12

SURF6

surfeit 6

WDR36

WD repeat domain 36

TBL3

transducin (beta)-like 3

DCAF13

WD repeats and SOF1 domain containing