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Table 1 SNP information for DEGs on Chr_D05

From: Genome-wide comparative transcriptome analysis of CMS-D2 and its maintainer and restorer lines in upland cotton

Gene Chromosome Start End TM-1 Three line Annotation Mutationtype Gene Annotation fpkm
B A R B A R
Gh_D05G0901 D05 7604314 7604314 A A A C downstream 17.3 kDa class I heat shock protein 17.4828 13.6636 29.6254
Gh_D05G0972 D05 8,177,118 8,177,118 A A A G exonic probable aquaporin PIP2–2 1.85272 5.44079 3.00306
Gh_D05G2138 D05 20,020,319 20,020,319 T T T C downstream protein DMR6-LIKE OXYGENASE 2-like 0.32569 1.99919 2.05069
Gh_D05G2233 D05 21,298,396 21,298,396 A A A T downstream uncharacterized protein 7.05292 14.1268 20.0803
Gh_D05G3043 D05 40,631,403 40,631,403 G G G A exonic lipid phosphate phosphatase 2-like 1.77645 2.15516 3.76462
Gh_D05G3129 D05 46,402,209 46,402,209 A A A G downstream cytochrome P450 like_TBP 3.20327 1.11014 11.0941
Gh_D05G3141 D05 46,856,961 46,856,961 A A A C exonic small ubiquitin-related modifier 1-like 14.5079 20.2293 40.4531
Gh_D05G3211 D05 49,817,512 49,817,512 T T T A exonic elongation factor 2 59.3663 48.7858 26.7643
Gh_D05G3427 D05 55,765,423 55,765,423 A A A T exonic proton pump-interactor 1-like 0 0 5.70722
Gh_D05G3508 D05 57,898,849 57,898,849 A A A G exonic synonymous (+)-delta-cadinene synthase 7.73005 0.79699 0.82779
Gh_D05G3696 D05 61,550,775 61,550,775 A A A G exonic probable LRR receptor-like serine/threonine-protein kinase 1.43551 0.94060 0.59621