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Table 1 Genes upregulated in response to PA23 treatment. B. napus identifiers used as per the Genome Genoscope Database (www.genoscope.cns.fr/brassicanapus). TAIR identifiers used as per The Arabidopsis Information Resource (TAIR, https://www.arabidopsis.org). Fold change in PA23 compared to the water control

From: The biocontrol agent Pseudomonas chlororaphis PA23 primes Brassica napus defenses through distinct gene networks

B. napus identifier TAIR identifier Gene name/function Fold change
BnaC03g29580D AT4G12490.1 EARLI1-like lipid transfer protein 2 53.07
BnaA09g20900D AT4G12490.1 EARLI1-like lipid transfer protein 2 40.22
BnaC07g14090D AT1G22070.1 TGA3 (Transcriptional activator) 35.95
BnaC06g37650D AT1G21310.1 EXT3 (Extensin 3) 32.56
BnaC06g18380D - F-box/LRR-repeat protein 4-like 30.61
BnaC02g31910D AT5G45890.1 SAG12 (Senescence-specific cysteine protease) 18.37
BnaC09g26890D - Possible nucleotide phosphorylase 17.43
BnaC08g46150D - Possible malonate decarboxylase 16.69
BnaC06g14700D - Photosystem II reaction center protein A 16.66
BnaA02g24130D AT5G45890.1 SAG12 (Senescence-specific cysteine protease) 15.15
BnaC05g10350D AT1G14080.1 FUT6 (Fucosyltransferase 6) 14.99
BnaCnng12890D ATMG00640.1 ATP4 (ATP synthase subunit 4) 14.18
BnaA10g18480D AT5G15800.1 SEP1 (SEPALLATA 1 transcription factor) 12.56
BnaCnng13130D ATMG00900.1 CcmC (Cytochrome c assembly protein) 12.04
BnaC04g28910D AT5G24150.1 Squalene monooxygenase 1-like 11.94
BnaAnng01030D AT5G04740.1 ACR12 (ACT-domain containing protein) 11.88
BnaCnng24320D AT3G09190.1 Concanavalin A-like lectin family protein 11.87
BnaA01g34180D ATCG00130.1 AtpF (ATP synthase subunit b, chloroplastic) 11.79
BnaC09g29230D - Possible omega-6 fatty acid desaturase 11.24
BnaAnng35860D AT3G28700.1 NADH dehydrogenase [ubiquinone] complex I, assembly factor 7-like 9.93
BnaA01g34980D AT4G19810.1 ChiC (Class V chitinase) 9.74
BnaCnng12960D ATMG00070.1 NAD9 (NADH dehydrogenase subunit 9) 9.64
BnaA01g33070D AT3G02310.1 SEP2 (SEPALLATA 2 transcription factor) 9.39
BnaC05g38940D AT3G14610.1 Cytochrome P450 8.93
BnaA03g38630D AT2G14580.1 Basic PR-1 8.63
BnaC09g27530D ATCG00340.1 PsaB (Photosystem I) 8.58
BnaC04g20930D AT3G30390.2 Probable amino acid transporter 8.47
BnaA07g37560D AT5G38100.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 8.02
BnaUnng03950D ATMG01170.1 ATPase subunit 6 7.90
BnaC04g21290D ATMG01360.1 COX1 (cytochrome c oxidase subunit 1) 7.87
BnaC09g32980D AT5G57220.1 Cytochrome P450, family 81, subfamily F, polypeptide 2 7.77
BnaA08g22890D AT1G17860.1 Kunitz family trypsin and protease inhibitor protein 7.73
BnaA07g21130D - Extensin-like protein 7.63
BnaA01g37280D AT4G11600.1 GPX6 (Glutathione peroxidase, mitochondrial) 7.49