From: Diversity and evolution of mariner-like elements in aphid genomes
Clade | Tribe | Species | Lineage name | Complete copy number | Length (bp) | TIR | ORF Length (aa) | Potentially active copy | |
---|---|---|---|---|---|---|---|---|---|
Length (bp) | Sequences | ||||||||
irritans DD34D | Macrosiphinimar | A. pisum | Apismar1.1 | 1 | 1334 | 28 | CGAGGCGTGTCCAGAAAGTAAGTGTACT | 354 | Yes |
Apismar1.2 | 1 | 1317 | 15 | TTCGAAAAGTAAGGG | 355 | No | |||
D. noxia | Dnomar1.1 | 1 | 1347 | 28 | CGAGGCGTGTCCAGAAAGTAAGTGTACT | 354 | No | ||
Dnomar1.2 | 1 | 1300 | 20 | TWCGAAAAKTAAGGGCCGTT | 347 | No | |||
M. persicae | Mpmar1.1 | 6 | 1334 | 28 | CGAGGCGTGTCCAGAAAGTAAGTGTACT | 355 | Yes | ||
Batmar-like | A. pisum | Apismar2.1 | 1 | 1323 | 30 | CGAGGTATGACAATAAAATAAYGAGACTTT | 354 | Yes | |
Apismar2.2 | 2 | 1280 | 22 | AAYACCCAGACAAMAWKTATTA | 354 | No | |||
D. noxia | Dnomar2.1 | 2 | 1326 | 27 | YGAKGTGWSAMATAAAATAAACGAGAC | 357 | No | ||
Dnomar2.2 | 2 | 1344 | 24 | CSWGGTGTGTTCAAAAAGWACYCG | 339 | No | |||
Dnomar-like | D. noxia | Dnomar3.1 | 1 | 1360 | 26 | CGAGGGCGGGCTGATAAGTAATGCCT | 362 | No | |
rosa DD41D | Crmar2-like | A. pisum | Apismar4.1 | 1 | 1355 | 32 | AAGGGTGTCTCAAAAAGAACGCCGGATTTRAA | 361 | Yes |
Apismar4.2 | 1 | 1299 | 32 | GGGTTTTTCAATARRAGCGCTCGAWSTTTSAT | 361 | No | |||
Apismar4.3 | 1 | 1316 | 27 | GGTGCGGCAGAGCCRACTGACGAGTTT | 362 | Yes | |||
LTIR | DD41D | A. pisum | Apismar5.1 | 1 | 2307 | 466 | TCACCAATTTAGGGAACACTGAATTTCTCGGCT | 370 | Yes |
DD40D | A. pisum | Apismar5.2 | 1 | 2423 | 460 | AATGTGTCAAACTTCTAGAGGTGTTTCTACACC | 351 | No |