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Table 1 Characteristics of 15 lineages corresponding to complete elements. The copy number, clade, length of the element, TIR and ORF, as well as the presence of potentially active copies, are specifically indicated for each complete sequence. The number of copies not truncated by “N” is mentioned in the fifth column. Potentially active copy = existence of at least copy with a complete ORF, with no frameshift or codon stop. In TIR sequences, the mirror sites are mentioned in bold

From: Diversity and evolution of mariner-like elements in aphid genomes

Clade

Tribe

Species

Lineage name

Complete copy number

Length (bp)

TIR

ORF Length (aa)

Potentially active copy

Length (bp)

Sequences

irritans DD34D

Macrosiphinimar

A. pisum

Apismar1.1

1

1334

28

CGAGGCGTGTCCAGAAAGTAAGTGTACT

354

Yes

Apismar1.2

1

1317

15

TTCGAAAAGTAAGGG

355

No

D. noxia

Dnomar1.1

1

1347

28

CGAGGCGTGTCCAGAAAGTAAGTGTACT

354

No

Dnomar1.2

1

1300

20

TWCGAAAAKTAAGGGCCGTT

347

No

M. persicae

Mpmar1.1

6

1334

28

CGAGGCGTGTCCAGAAAGTAAGTGTACT

355

Yes

Batmar-like

A. pisum

Apismar2.1

1

1323

30

CGAGGTATGACAATAAAATAAYGAGACTTT

354

Yes

Apismar2.2

2

1280

22

AAYACCCAGACAAMAWKTATTA

354

No

D. noxia

Dnomar2.1

2

1326

27

YGAKGTGWSAMATAAAATAAACGAGAC

357

No

Dnomar2.2

2

1344

24

CSWGGTGTGTTCAAAAAGWACYCG

339

No

Dnomar-like

D. noxia

Dnomar3.1

1

1360

26

CGAGGGCGGGCTGATAAGTAATGCCT

362

No

rosa DD41D

Crmar2-like

A. pisum

Apismar4.1

1

1355

32

AAGGGTGTCTCAAAAAGAACGCCGGATTTRAA

361

Yes

Apismar4.2

1

1299

32

GGGTTTTTCAATARRAGCGCTCGAWSTTTSAT

361

No

Apismar4.3

1

1316

27

GGTGCGGCAGAGCCRACTGACGAGTTT

362

Yes

LTIR

DD41D

A. pisum

Apismar5.1

1

2307

466

TCACCAATTTAGGGAACACTGAATTTCTCGGCT

370

Yes

DD40D

A. pisum

Apismar5.2

1

2423

460

AATGTGTCAAACTTCTAGAGGTGTTTCTACACC

351

No