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Table 5 Table showing differentially expressed genes (each probe) between pathological complete responders (pCR) and those with no pathological complete response (non-pCR)

From: Integrative analysis of copy number and gene expression in breast cancer using formalin-fixed paraffin-embedded core biopsy tissue: a feasibility study

FDR

Log-Fold Change

Genes

Gene name

0.087

0.911

CXCL9

CHEMOKINE (C-X-C MOTIF) LIGAND 9

0.104

0.586

ARHA

RAS HOMOLOGUE GENE FAMILY, MEMBER A

0.104

0.700

ARHGDIB

RHO GDP DISSOCIATION INHIBITOR (GDI) BETA

0.104

0.925

BCL3

B-CELL CLL/LYMPHOMA 3

0.104

0.665

CD44

CD44 ANTIGEN (INDIAN BLOOD GROUP)

0.104

0.912

CDKN1B

CYCLIN-DEPENDENT KINASE INHIBITOR 1B (P27, KIP1)

0.104

0.638

CSF1R

COLONY STIMULATING FACTOR 1 RECEPTOR, FORMERLY MCDONOUGH FELINE SARCOMA VIRAL (V-FMS) ONCOGENE HOMOLOGUE

0.104

0.742

DCN

DECORIN

0.104

0.783

EGR1

EARLY GROWTH RESPONSE 1

0.104

0.600

LCK

LYMPHOCYTE-SPECIFIC PROTEIN TYROSINE KINASE