Table 1 Summary of small RNA sequencing data in the four libraries from tomato
From: Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing
Type | SCK | SD | TCK | TD | ||||
|---|---|---|---|---|---|---|---|---|
Count | Percentage (%) | Count | Percentage (%) | Count | Percentage (%) | Count | Percentage (%) | |
Raw reads | 15,183,983 | 100 | 11,516,443 | 100 | 11,437,462 | 100 | 11,301,325 | 100 |
clean reads | 14,650,320 | 96.49 | 11,120,683 | 96.56 | 11,203,392 | 97.95 | 11,109,195 | 98.30 |
Mapped | 8,234,412 | 54.23 | 6,222,405 | 54.03 | 7,056,971 | 61.70 | 5,772,844 | 51.08 |
rRNA | 98,876 | 0.65 | 130,051 | 1.13 | 109,746 | 0.96 | 70,194 | 0.62 |
tRNA | 6958 | 0.05 | 7050 | 0.06 | 7037 | 0.06 | 6223 | 0.06 |
snRNA | 31,275 | 0.21 | 25,056 | 0.22 | 29,932 | 0.26 | 38,310 | 0.34 |
snoRNA | 26,290 | 0.17 | 50,073 | 0.43 | 25,608 | 0.23 | 53,981 | 0.48 |
miRNA | 393,896 | 2.59 | 344,788 | 2.99 | 400,662 | 3.50 | 447,865 | 3.96 |
other ncRNA | 336,947 | 2.22 | 221,085 | 1.92 | 362,003 | 1.66 | 262,282 | 2.32 |