Table 1 Summary of sequencing data quality
Sample | reads | HQ reads | Total bps | Total bps in HQ reads | Q20 (%) | N (%) | GC (%) |
|---|---|---|---|---|---|---|---|
CT1 | 55,643,444 | 52,340,970 | 5,619,987,844 | 5,286,437,970 | 98.52 | 0.89 | 42.54 |
CT2 | 117,283,874 | 110,687,372 | 11,845,671,274 | 11,179,424,572 | 98.48 | 1.02 | 42.86 |
CC1 | 90,303,872 | 85,210,840 | 9,120,691,072 | 8,606,294,840 | 98.53 | 0.89 | 43.81 |
CC2 | 102,439,604 | 96,792,568 | 10,346,400,004 | 9,776,049,368 | 98.53 | 0.89 | 43.11 |
KT1 | 81,708,490 | 77,877,970 | 8,252,557,490 | 7,865,674,970 | 98.87 | 0.89 | 42.46 |
KT2 | 85,728,846 | 81,281,390 | 8,658,613,446 | 8,209,420,390 | 98.78 | 0.85 | 42.59 |
KC1 | 61,961,226 | 58,117,664 | 6,258,083,826 | 5,869,884,064 | 98.73 | 0.85 | 42.53 |
KC2 | 107,703,362 | 102,123,252 | 10,878,039,562 | 10,314,448,452 | 98.72 | 0.87 | 43.10 |
total | 702,772,718 | 664,432,026 | 70,980,044,518 | 67,107,634,626 | 98.65 | 0.89 | 42.88 |