Table 1 Summary of clean reads and mapped to the radish reference genome
Sample name | NAU-RG | NAU-LB | NAU-YH |
|---|---|---|---|
Total reads | 64,000,056 | 49,631,196 | 50,386,238 |
Total mapped | 50,047,249 (78.2%) | 34,770,143 (70.06%) | 37,512,238 (74.45%) |
Multiple mapped | 565,774 (0.88%) | 357,032 (0.72%) | 400,663 (0.8%) |
Uniquely mapped | 49,481,475 (77.31%) | 34,413,111 (69.34%) | 37,111,575 (73.65%) |
Read-1 | 24,828,322 (38.79%) | 17,299,967 (34.86%) | 18,743,053 (37.2%) |
Read-2 | 24,653,153 (38.52%) | 17,113,144 (34.48%) | 18,368,522 (36.46%) |
Reads map to ‘+’ | 24,760,998 (38.69%) | 17,207,989 (34.67%) | 18,602,410 (36.92%) |
Reads map to ‘-’ | 24,720,477 (38.63%) | 17,205,122 (34.67%) | 18,509,165 (36.73%) |
Non-splice reads | 37,822,982 (59.1%) | 25,258,482 (50.89%) | 27,697,799 (54.97%) |
Splice reads | 11,658,493 (18.22%) | 9,154,629 (18.45%) | 9,413,776 (18.68%) |