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Table 1 Summary of clean reads and mapped to the radish reference genome

From: Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

Sample name NAU-RG NAU-LB NAU-YH
Total reads 64,000,056 49,631,196 50,386,238
Total mapped 50,047,249 (78.2%) 34,770,143 (70.06%) 37,512,238 (74.45%)
Multiple mapped 565,774 (0.88%) 357,032 (0.72%) 400,663 (0.8%)
Uniquely mapped 49,481,475 (77.31%) 34,413,111 (69.34%) 37,111,575 (73.65%)
Read-1 24,828,322 (38.79%) 17,299,967 (34.86%) 18,743,053 (37.2%)
Read-2 24,653,153 (38.52%) 17,113,144 (34.48%) 18,368,522 (36.46%)
Reads map to ‘+’ 24,760,998 (38.69%) 17,207,989 (34.67%) 18,602,410 (36.92%)
Reads map to ‘-’ 24,720,477 (38.63%) 17,205,122 (34.67%) 18,509,165 (36.73%)
Non-splice reads 37,822,982 (59.1%) 25,258,482 (50.89%) 27,697,799 (54.97%)
Splice reads 11,658,493 (18.22%) 9,154,629 (18.45%) 9,413,776 (18.68%)
  1. Multiple mapped, number of reads mapped to multiple sites; uniquely mapped, number of reads mapped to one site only; Read-1 and Read-2, reads from the two separate lanes; Reads mapped to ‘+’ or ‘−’, mapped to ‘+’ or ‘−’ strands of DNA; Splice reads, number of reads mapped to splice sites