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Table 2 SNPs zygosity and corresponding transition to transversion ratio (Ts/Tv) in pairwise transcriptome comparisons

From: Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

  Number (%) C/T (%) A/G (%) C/G (%) A/T (%) C/A (%) T/G (%) Ts/Tv
   Transition Transition Transversion Transversion Transversion Transversion  
All SNPs 22,412(100) 6643(29.6) 6474(28.9) 1992(8.9) 2661(11.9) 2383(10.6) 2259(10.1) 1.41
Homozygous
NAU-LB and NAU-RG 3838 (17.1) 1085 (4.8) 1188 (5.3) 403 (1.8) 423 (1.9) 418 (1.9) 319 (1.4) 1.35
NAU-LB and NAU-YH 3209 (14.3) 940 (4.2) 887 (4.0) 316 (1.4) 392(1.7) 346 (1.5) 328 (1.5) 1.32
NAU-RG and NAU-YH 1342 (6.0) 378 (1.7) 377 (1.7) 136 (0.6) 167 (0.7) 155 (0.7) 129 (6.0) 1.29
Biallelic
NAU-LB and NAU-RG 9930 (44.3) 2940 (13.1) 2809(12.5) 1226(5.5) 908 (4.1) 1032 (4.6) 1015 (4.5) 1.38
NAU-LB and NAU-YH 9559 (42.7) 2808 (12.5) 2748 (12.3) 849 (3.8) 1179 (5.3) 1004 (4.5) 971 (4.3) 1.33
NAU-RG and NAU-YH 13,241 (59.1) 3913 (17.5) 3802 (17.1) 1616 (7.2) 1163 (5.2) 1335 (6.0) 1412 (6.3) 1.4