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Table 4 Genetic diversity analysis with InDel markers developed in radish

From: Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

InDel Primer name

Scaffold

Position

Expected

Na

HO

HE

PIC

Forward primer

Reverse primer

size (bp)

NAU-RsInDel1

Rsa1.0_02158.1

133,381

124

2

0.27

0.36

0.38

TCCAGCACCAAGAACTAT

TAAAACACCACCAAAAGG

NAU-RsInDel2

Rsa1.0_04545.1

9016

154

2

0.27

0.51

0.46

GTCGGATTTGGTAAAGAGG

CGTCCCTGAACTGGTCATA

NAU-RsInDel3

Rsa1.0_00949.1

39,724

141

2

0.53

0.47

0.44

CATCTTCGGGATCAACGG

ATCGGACAACTCAAAACCAACT

NAU-RsInDel4

Rsa1.0_00251.1

287,457

180

2

0

0.5

0.49

AGACTGCCGAGTATCAAT

AATCGCTGGAGAAGAAAT

NAU-RsInDel5

Rsa1.0_03247.1

13,547

96

2

0.16

0.25

0.26

AGTGTCTTTGCGGCATCT

TAGGGTTTGCGATTTGGA

NAU-RsInDel6

Rsa1.0_00071.1

141,781

111

2

0.25

0.5

0.51

TGAGGAAACAGAACAAGA

GCTTAGGCTTAGCATTAT

NAU-RsInDel7

Rsa1.0_00660.1

52,677

175

2

0.16

0.43

0.38

TGCTATCAAAACGCAAAT

CAAGGAAAATAAAACTATGGAG

NAU-RsInDel8

Rsa1.0_01209.1

39,624

112

2

0.07

0.43

0.41

ATCATCAATCTCGCTCTTT

AGACTATCACCTCCTCTGC

NAU-RsInDel9

Rsa1.0_01100.1

52,433

153

2

0.31

0.35

0.28

AGCAGCCAGTGAGATTAG

ACACGGTATTTTCCAACC

NAU-RsInDel10

Rsa1.0_00232.1

38,667

162

2

0.52

0.51

0.42

TAGTGAGTGAAGACACCAAC

TTAAAGCTGCAGAAGAAG

NAU-RsInDel11

Rsa1.0_01156.1

25,754

165

2

0.1

0.34

0.32

CCCTCTGCTTTCATCCTT

TCTCCGCTGACCACAATT

NAU-RsInDel12

Rsa1.0_15591.1

936

140

2

0.39

0.39

0.35

TACTCCAAATTCGCATCA

TCATCGGAAGGTAAGACG

NAU-RsInDel13

Rsa1.0_01184.1

26,764

177

2

0.07

0.29

0.37

ATGATTCTCCATCCAAGC

GTCGCATTTTCATTTCCT

NAU-RsInDel14

Rsa1.0_03334.1

18,880

127

4

0.41

0.75

0.69

CTACTTGTCCGAGCTTCA

TAACTCCCGTTGTTGATA

NAU-RsInDel15

Rsa1.0_27069.1

235

109

2

0.25

0.31

0.26

TTATGAGAAACGTCAAGG

AGTGGAGAAAGGAACAAG

NAU-RsInDel16

Rsa1.0_20672.1

478

172

3

0.19

0.51

0.45

TAGAGGGTGAAACGCAGGAA

TTGGGAAGTGGAACAAAGCA

NAU-RsInDel17

Rsa1.0_00250.1

39,440

164

2

0.19

0.36

0.33

ATTTCAACAGATAAACCGACAC

GCCTGAGCCCATCAACTA

NAU-RsInDel18

Rsa1.0_02411.1

6272

178

2

0.06

0.48

0.41

GGGAACCCAACAACCTAT

TTATTCGACGGCACAAAC

NAU-RsInDel19

Rsa1.0_00016.1

354,003

162

2

0.46

0.46

0.53

TCCAAGGCTAGTAGAAAC

TGACATCCAACAAAGACA

NAU-RsInDel20

Rsa1.0_01401.1

93

134

2

0.34

0.47

0.35

AAATAAGACACGAAACCCTG

ATCGAAACTCCTCCCTCC

NAU-RsInDel21

Rsa1.0_01219.1

21,510

148

2

0.13

0.5

0.45

ACAACAACGGAGACTTGG

GTGAACCTGTCGGCTATG

NAU-RsInDel22

Rsa1.0_00816.1

110,085

145

2

0.17

0.48

0.44

GTCCGAACAAAAGGTGAGATT

ACTATTGATTTGATTTGGGTTGTG

NAU-RsInDel23

Rsa1.0_00744.1

53,460

145

2

0.37

0.44

0.42

TCTCAAGGACCCAACACTACA

TTGCAAAACTGGAAAAGGAA

NAU-RsInDel24

Rsa1.0_02097.1

17,223

124

2

0.19

0.42

0.37

TAAAATTGATAAACCTGCTC

CTGTGATTCTGAACCTCC

NAU-RsInDel25

Rsa1.0_01975.1

14,276

163

2

0.03

0.03

0.09

CCAGAAAACGAATGAAAAACTACT

AGAAACACATGGCTGAGAGGA

NAU-RsInDel26

Rsa1.0_00101.1

211,799

180

2

0.34

0.5

0.37

CAGCGAAACCACAAACACAA

GCTAAGTCTCCCTCCTCCATT

NAU-RsInDel27

Rsa1.0_04806.1

7466

184

2

0.31

0.41

0.32

TGTATTAACCACCACCAT

CACGAAAGATAACAACTCAA

NAU-RsInDel28

Rsa1.0_04167.1

18,003

200

2

0.19

0.35

0.28

TCTCACCCCAGCCACTTT

TATCCCACCTGTCTCGTT

NAU-RsInDel29

Rsa1.0_02690.1

16,462

165

2

0.25

0.51

0.38

AATCTTCCTGCGCCACAT

TCGTTTGCCTTCTCCTCA

NAU-RsInDel30

Rsa1.0_08988.1

3062

105

2

0.23

0.49

0.41

AGAGGGAAGCCACTATCA

TTCCGAAGATTAGATGAGAT

NAU-RsInDel31

Rsa1.0_14009.1

2697

189

3

0.26

0.46

0.42

TCTTGTTCTTTGGGTAAT

AAGGACTCAATCTATGGC

NAU-RsInDel32

Rsa1.0_02642.1

14,660

104

3

0.03

0.48

0.5

TACAATAAAACCCTCAAG

AAGTGGTGATAAGGAAAC

NAU-RsInDel33

Rsa1.0_02467.1

15,972

131

2

0.03

0.5

0.45

CAGATAAAGCCAAAAGTC

ATCTGTTTTACTTGGAGC

NAU-RsInDel34

Rsa1.0_02467.1

15,842

130

3

0.28

0.57

0.49

TCTCAAACCAAGGAAACC

ACGAAGAACTACGAGGCT

NAU-RsInDel35

Rsa1.0_00012.1

70,110

193

2

0.41

0.5

0.37

TTTTCGAGAAGAAGAAAGTC

GGACAAATACTGCCACAT

NAU-RsInDel36

Rsa1.0_00042.1

55,669

124

2

0.28

0.48

0.36

TAAAAGCCAATACAGAAG

CACAGACGAAAGACCATA

NAU-RsInDel37

Rsa1.0_00105.1

127,102

105

2

0.29

0.5

0.41

GGAGGAAGACGAGTTGAT

TGAGACGTTTTGGAAGTG

NAU-RsInDel38

Rsa1.0_01482.1

15,564

102

2

0.26

0.41

0.49

TAAAATAACAAATCACTCCCTC

CTAACCCTAATCGCACCC

NAU-RsInDel39

Rsa1.0_00816.1

109,998

140

2

0.25

0.51

0.38

CTCACAACCCAAATCAAA

TACCTGGAGGAAGGAAAG

NAU-RsInDel40

Rsa1.0_04618.1

3100

117

2

0.47

0.49

0.45

GAAGAGCTGGAGAAGGAA

AGGCCAACTGCTAGTAGATT