Table 2 Evaluation of scaffolds generated by SALSA and LACHESIS for the human NA12878 assembly
From: Scaffolding of long read assemblies using long range contact information
Metric | SALSA | LACHESIS |
|---|---|---|
Number of scaffolds | 1555 | 23 |
Total bases | 2.92 Gb | 2.79 Gb |
NG50 | 60.02 Mb | 143.802 Mb |
% Aligned bases | 94.52% | 94.72% |
Breakpoints | 33079 | 26288 |
Relocations | 136 | 373 |
Translocations | 96 | 79 |
Inversions | 408 | 474 |