Skip to main content

Table 2 Evaluation of scaffolds generated by SALSA and LACHESIS for the human NA12878 assembly

From: Scaffolding of long read assemblies using long range contact information

Metric SALSA LACHESIS
Number of scaffolds 1555 23
Total bases 2.92 Gb 2.79 Gb
NG50 60.02 Mb 143.802 Mb
% Aligned bases 94.52% 94.72%
Breakpoints 33079 26288
Relocations 136 373
Translocations 96 79
Inversions 408 474