Table 2 Five examples of equine lncRNA compared to human lncRNA in terms of relative position to surrounding genes and BLASTN percent identity and percent coverage of the equine lncRNA relative to the human counterparts
From: Identification of long non-coding RNA in the horse transcriptome
Proposed lncRNA | Horse coordinates | Distance to nearest gene in horse | Human coordinates | Distance to nearest gene in human | % identity | % coverage |
|---|---|---|---|---|---|---|
Gas5 | chr5:9,536,77 0–9,543,475 | 390 (5’antisense ZBTB37) | chr1: 173,863,900–173,867,989 | 93 (5’antisense ZBTB37) | 70 | 43 |
NEAT1 | Chr12:255851 09–25613745 | 7235(3′ FRMD8) | Chr11:65,422,798–65,445,538 | 9274 (3′ FRMD8) | 74 | 63 |
LINC00884 | Chr19:31292750–31300597 | 1030 (5′ antisense to ATP13A3) | chr3:194,487,140–194,488,545 | Overlap with ATP13A3 (antisense) | 68 | 16 |
TSIX | chrX: 55,214,315–55,2 43,223 | Complete overlap (antisense) to XIS7 lncRNA | chrX:73,792,205–73,829,231 | Overlap with XIST lncRNA (antisense) | 75 | 54 |
EPHA5-AS | chr3:68,892,305–68,911,651 | 131 (5′ antisense EPHAS) | chr4:65,669,961–65,693,386 | 382 (5′ antisense EPHA5) | 77 | 91 |