Genomic, proteomic and bioinformatic analysis of two temperate phages in Roseobacter clade bacteria isolated from the deep-sea water

Tang, Kai; Lin, Dan; Zheng, Qiang; Liu, Keshao; Yang, Yujie; Han, Yu; Jiao, Nianzhi

doi:10.1186/s12864-017-3886-0

Table 1 Genomic and proteomic features of phages vB_ThpS-P1 and vB_PeaS-P1

From: Genomic, proteomic and bioinformatic analysis of two temperate phages in Roseobacter clade bacteria isolated from the deep-sea water

ORF	Annotation	Peptides^a	Unique Peptides^a	Homologs^b	ORF	Annotation	Peptides^a	Unique Peptides^a	Homologs^b
Thiobacimonasphage vB_ThpS-P1 (size:39,591 bp; GC content:66.7%)					Pelagibaca phage vB_PeaS-P1 (size:38,686 bp; GC content:63.8%)
ORF1	Hypothetical protein			0	ORF1	Phage repressor			9
ORF2	Hypothetical protein			0	ORF2	Hypothetical protein			6
ORF3	Hypothetical protein			0	ORF3	Hypothetical protein			1
ORF4	Hypothetical protein			0	ORF4	Hypothetical protein			0
ORF5	Phage repressor			9	ORF5	Hypothetical protein			0
ORF6	Hypothetical protein			0	ORF6	Hypothetical protein			0
ORF7	Hypothetical protein			0	ORF7	Hypothetical protein			0
ORF8	Hypothetical protein			2	ORF8	Chromosome partitioning protein parB			66
ORF9	Chromosome partitioning protein parB			66	ORF9	Mu-like phage Flu Mu transposase A			189
ORF10	Mu-like phage Flu Mu transposase A			189	ORF10	Mu-like phage Flu Mu transposase B	6	6	128
ORF11	Mu-like phage Flu Mu transposase B			128	ORF11	Hypothetical protein			109
ORF12	Hypothetical protein			8	ORF12	Transcriptional regulator			146
ORF13	Transcriptional regulator			146	ORF13	Hypothetical protein			0
ORF14	DNA transposition protein gpB			0	ORF14	Hypothetical protein			2
ORF15	Hypothetical protein			0	ORF15	Protein of unknown function DUF3164	2	2	363
ORF16	Hypothetical protein			0	ORF16	Hypothetical protein			0
ORF17	Protein of unknown function DUF3164			363	ORF17	DNA-binding protein HU-beta			96
ORF18	Mu-like phage transcriptional regulator			610	ORF18	Hypothetical protein			0
ORF19	Hypothetical protein			22	ORF19	Hypothetical protein			1
ORF20	Hypothetical protein			13	ORF20	Mu-like phage transcriptional regulator			610
ORF21	N-acetylmuramoyl-L-alanine amidase	2	2	12	ORF21	Hypothetical protein			0
ORF22	Hypothetical protein			1	ORF22	N-acetylmuramoyl-L-alanine amidase	6	5	12
ORF23	Hypothetical protein			0	ORF23	Hypothetical protein			0
ORF24	Hypothetical protein			15	ORF24	Hypothetical protein			0
ORF25	Mu-like phage FluMu protein gp26	3	2	493	ORF25	Mu-like phage FluMu protein gp26	6	5	493
ORF26	Hypothetical protein			16	ORF26	Hypothetical protein			16
ORF27	Hypothetical protein			1	ORF27	Hypothetical protein			2
ORF28	Hypothetical protein			1	ORF28	Hypothetical protein			1
ORF29	Hypothetical protein			0	ORF29	Hypothetical protein			0
ORF30	Mu-like phage FluMu protein gp28			494	ORF30	Mu-like phage FluMu protein gp28			494
ORF31	Mu-like phage FluMu protein gp29	122	28	564	ORF31	Mu-like phage FluMu protein gp29	42	30	564
ORF32	Mu-like phage FluMu F protein	53	15	635	ORF32	Mu-like phage FluMu F protein	4	3	2
ORF33	Virion morphogenesis protein	1	1	683	ORF33	Hypothetical protein	4	2	0
ORF34	Mu-like phage I protein	124	15	552	ORF34	Mu-like phage I protein	2	2	552
ORF35	Hypothetical protein	86	5	253	ORF35	Hypothetical protein	90	8	253
ORF36	Mu-like phage major head subunit gpT	172	20	537	ORF36	Mu-like phage major head subunit gpT	197	36	537
ORF37	Hypothetical protein			1	ORF37	Hypothetical protein			1
ORF38	Mu-like phage FluMu protein gp36	51	9	675	ORF38	Mu-like phage FluMu protein gp36	11	8	675
ORF39	Hypothetical protein	26	7	88	ORF39	Virion morphogenesis protein			683
ORF40	Hypothetical protein			0	ORF40	Hypothetical protein	7	6	3
ORF41	Hypothetical protein	65	10	49	ORF41	Hypothetical protein	80	18	3
ORF42	Hypothetical protein			0	ORF42	Hypothetical protein			17
ORF43	Hypothetical protein			0	ORF43	Hypothetical protein			3
ORF44	Hypothetical protein			23	ORF44	Tail protein	46	39	4
ORF45	Tail protein	84	34	0	ORF45	Hypothetical protein	2	2	0
ORF46	Hypothetical protein	11	3	13	ORF46	Hypothetical protein	2	2	12
ORF47	Hypothetical protein	20	6	12	ORF47	Tail protein			13
ORF48	Hypothetical protein			0	ORF48	Tail protein	24	20	13
ORF49	Tail protein			13	ORF49	Hypothetical protein	60	34	0
ORF50	Tail protein	41	18	13	ORF50	Hypothetical protein			0
ORF51	Hypothetical protein	57	15	0	ORF51	Hypothetical protein			0
ORF52	Hypothetical protein			0

^aThe number of and peptide and unique peptide detected from tandem mass spectrometry (MS/MS) are list
^bThe number of identified sequence homologous to two phages from bacterial genomes containing a set of Mu-like elements (Additional file 4: Table S4)

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ISSN: 1471-2164

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