Table 2 Highest expressed genes with expression levels (TPM) more than 10 times the average per coding sequence, sorted in order of expression level
From: Transcriptome analysis of Haloquadratum walsbyi: vanity is but the surface
Gene-designation | gene | TPM | Function |
|---|---|---|---|
HQ1207A | csg | 1843 | Cell surface glycoprotein |
HQ1014A | bopI | 1833 | Energy conversion |
HQ1205A | HQ1205A | 1050 | Cell surface glycoprotein/ adhesin |
HQ2461A | sod | 671 | Superoxide dismutase |
HQ1415A | ftsZ2 | 615 | Cell division protein |
HQ3385A | tef1a | 610 | Elongation factor 1-alpha |
HQ1782A | gvpA | 542 | Gas vesicle production |
HQ2545A | sfuA | 456 | Iron transport |
HQ1276A | thi4 | 447 | Putative thiamine biosynthetic enzyme |
HQ1706A | sufC | 432 | Fe-S cluster assembly ATPase |
HQ3729A | tssA2 | 374 | Sulfurtransferase |
HQ1253A | rpl42e | 370 | 50S ribosomal protein L44e |
HQ3408A | tfbA7 | 369 | Transcription initiation factor IIB |
HQ1501A | HQ1501A | 363 | Uncharacterized protein |
HQ3391A | rps12 | 346 | 30S ribosomal protein S12 |
HQ2843A | HQ2843A | 346 | Uncharacterized protein -DUF171 family |
HQ1707A | sufB1 | 331 | Fe-S cluster assembly |
HQ1172A | HQ1172A | 318 | RNA binding / TRAM domain protein |
HQ1100A | HQ1100A | 279 | Uncharacterized protein |
HQ1133A | HQ1133A | 276 | Uncharacterized protein |
HQ3117A | citB | 274 | Aconitate hydratase (TCA cycle enzyme) |
HQ3366A | HQ3366A | 269 | Uncharacterized protein |
HQ3457A | fer7 | 258 | Ferredoxin (2Fe-2S) - electron transfer |
HQ2649A | HQ2649A | 247 | Uncharacterized protein -DUF293 domain |
HQ3356A | porA | 243 | pyruvate: ferredoxin oxidoreductase |
HQ2902A | rpl10 | 243 | 50S ribosomal protein L10 |
HQ1283A | rpl43e | 235 | 50S ribosomal protein L43 |
HQ3242A | atpD | 234 | V-type ATP synthase subunit D |
HQ3309A | rps8e | 232 | 30S ribosomal protein S8e |
HQ3020A | bcp4 | 223 | Peroxiredoxin |