Fig. 6
From: Genome-scale analysis of regulatory protein acetylation enzymes from photosynthetic eukaryotes
Consensus phylogenetic tree and subcellular localization information for Class II and IV HDA-family KDACs from across photosynthetic and select non-photosynthetic eukaryotes. Phylogenetic tree inference and subcellular localization information was performed as outlined in the Materials and Methods. Key nodes are labelled with branch support values from 2 phylogenetic inference programs: PhyML and PhyloBayes. Node A: (0.94/0.99); Node B: (0.86/0.99); Node C: (1.0/0.95); Node D: (0.98/0.96); Node E: (0.95/0.99); Node F: (0.60/0.72); Node G: (0.95/0.99); Node H: (0.93/0.71); Node I: (1.0/0.97); Node J: (0.99/0.80); Node K: (1.0/1.0); Node L: (1.0/1.0); Node M: (0.97/0.95); Node N: (0.83/0.90); Node O: (1.0/0.83); Node P: (1.0/0.97); Node Q: (0.99/1.0); Node R: (0.93/0.99); Node S: (0.89/0.82). Consensus subcellular localization information was derived from 5 prediction algorithms. Different species types and subcellular localizations are shown. Proteins without a known localization have no demarcation. Stars (*) denote a sub-class of green algae/heterokont HDA-family KDACs possessing an ankyrin domain. All sequences used in phylogenetic tree generation are listed in Additional file 3, while compiled in silico subcellular localization data can be found in Additional file 5