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Table 3 Total number of SNPs, their locations (inter or intragenic), and effects in pairwise comparisons of four Urochloa chloroplast genomes

From: Molecular dating of phylogenetic divergence between Urochloa species based on complete chloroplast genomes

Pairwise comparison U. brizantha
x
U. decumbens
U. ruziziensis
x
U. decumbens
U. ruziziensis
x
U. brizantha
U. humidicola
x
U. ruziziensis
U. humidicola
x
U. brizantha
U. humidicola
x
U. decumbens
Total number of SNPs 170 752 788 1319 1307 1338
Number of Effects 172 767 805 1356 1343 1371
Intergenic 119 418 440 734 749 772
Intragenic 49 315 328 526 502 511
 Intron 10 52 61 82 66 72
 Exon 39 263 267 444 436 439
  synonymous coding mutation 20 174 175 305 293 296
  non-synonymous coding mutation 19 89 92 140 144 144
   Missense 19 89 92 139 144 144
   Nonsense - - - 1 - -
Other (tRNAs) 4 34 37 96 92 88