Molecular dating of phylogenetic divergence between Urochloa species based on complete chloroplast genomes

BMC Genomics

Table 3 Total number of SNPs, their locations (inter or intragenic), and effects in pairwise comparisons of four Urochloa chloroplast genomes

Pairwise comparison	U. brizantha x U. decumbens	U. ruziziensis x U. decumbens	U. ruziziensis x U. brizantha	U. humidicola x U. ruziziensis	U. humidicola x U. brizantha	U. humidicola x U. decumbens
Total number of SNPs	170	752	788	1319	1307	1338
Number of Effects	172	767	805	1356	1343	1371
Intergenic	119	418	440	734	749	772
Intragenic	49	315	328	526	502	511
Intron	10	52	61	82	66	72
Exon	39	263	267	444	436	439
synonymous coding mutation	20	174	175	305	293	296
non-synonymous coding mutation	19	89	92	140	144	144
Missense	19	89	92	139	144	144
Nonsense	-	-	-	1	-	-
Other (tRNAs)	4	34	37	96	92	88

ISSN: 1471-2164