Table 1 Tumor types and number of TCGA RNA-seq samples used in the analysis
From: A comprehensive genomic pan-cancer classification using The Cancer Genome Atlas gene expression data
Available Cancer Types | Number of Samples | |||
|---|---|---|---|---|
Pan-cancer | Males (%) | Females (%) | ||
Adrenocortical carcinoma | ACC | 79 | 31 (0.76) | 48 (1.82) |
Bladder urothelial carcinoma | BLCA | 408 | 272 (6.67) | 99 |
Breast invasive carcinoma | BRCA | 1102 | Sex-specific (omitted) | |
Cervical squamous cell carcinoma and endocervical adenocarcinoma | CESC | 306 | Sex-specific (omitted) | |
Cholangiocarcinoma | CHOL | 36 | Too few (omitted) | |
Colon adenocarcinoma | COAD | 287 | 156 (3.82) | 129 (4.89) |
Lymphoid neoplasm diffuse large B-cell lymphoma | DLBC | 48 | Too few (omitted) | |
Esophageal carcinoma | ESCA | Not available | 159 (3.90) | 26 (0.99) |
Glioblastoma multiforme | GBM | 169 | 109 (2.67) | 59 (2.24) |
Head and Neck squamous cell carcinoma | HNSC | 522 | 385 (9.43) | 137 (5.19) |
Kidney chromophobe | KICH | 66 | Too few (omitted) | |
Kidney renal clear cell carcinoma | KIRC | 534 | 346 (8.48) | 188 (7.13) |
Kidney renal papillary cell carcinoma | KIRP | 291 | 214 (5.24) | 77 (2.92) |
Acute Myeloid Leukemia | LAML | 173 | 93 (2.28) | 80 (3.03) |
Brain lower grade glioma | LGG | 534 | 292 (7.16) | 241 (9.14) |
Liver hepatocellular carcinoma | LIHC | 374 | 253 (6.20) | 121 (4.59) |
Lung adenocarcinoma | LUAD | 517 | 240 (5.88) | 277 (10.50) |
Lung squamous cell carcinoma | LUSC | 502 | 371 (9.09) | 131 (4.97) |
Mesothelioma | MESO | 87 | 71 (1.74) | 16 (0.61) |
Ovarian serous cystadenocarcinoma | OV | 266 | Sex-specific (omitted) | |
Pancreatic adenocarcinoma | PAAD | 179 | 99 (2.43) | 80 (3.03) |
Pheochromocytoma and Paraganglioma | PCPG | 184 | 82 (2.01) | 102 (3.87) |
Prostate adenocarcinoma | PRAD | 498 | Sex-specific (omitted) | |
Rectum adenocarcinoma | READ | 95 | 52 (1.27) | 42 (1.59) |
Sarcoma | SARC | 263 | 119 (2.92) | 144 (5.46) |
Skin cutaneous melanoma | SKCM | 473 | 259 (6.35) | 156 (5.91) |
Stomach adenocarcinoma | STAD | Not available | 268 (6.57) | 147 (5.57) |
Testicular germ cell tumors | TGCT | 156 | Sex-specific (omitted) | |
Thyroid carcinoma | THCA | 513 | 102 (2.50) | 246 (9.33) |
Thymoma | THYM | 120 | 63 (1.54) | 57 (2.16) |
Uterine corpus endometrial carcinoma | UCEC | 177 | Sex-specific (omitted) | |
Uterine carcinosarcoma | UCS | 57 | Too few (omitted) | |
Uveal melanoma | UVM | 80 | 45 (1.10) | 35 (1.33) |
Total | Â | 9096 | 4081 | 2638 |