Table 4 Quartiles for πcc values when classifying 23 non-sex-specific tumor types separately using male and female samples across 1000 GA/KNN runs for each of five training/testing partitions (5000 runs total)
From: A comprehensive genomic pan-cancer classification using The Cancer Genome Atlas gene expression data
Type | Minimum | 1st Quartile | 3rd Quartile | Maximum | Modal Prediction Accuracy | |||||
|---|---|---|---|---|---|---|---|---|---|---|
F | M | F | M | F | M | F | M | F | M | |
ACC | 0.01 | 0.01 | 0.83 | 0.61 | 0.95 | 0.84 | 1.00 | 0.95 | 0.97 | 0.93 |
BLCA | 0.01 | 0.04 | 0.46 | 0.66 | 0.91 | 0.96 | 1.00 | 1.00 | 0.89 | 0.93 |
COAD | 0.22 | 0.12 | 0.83 | 0.83 | 0.93 | 0.91 | 1.00 | 0.96 | 1.00 | 0.99 |
GBM | 0.35 | 0.59 | 0.91 | 0.96 | 0.99 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 |
HNSC | 0.54 | 0.06 | 0.93 | 0.96 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 |
KIRC | 0.00 | 0.00 | 0.98 | 0.98 | 1.00 | 1.00 | 1.00 | 1.00 | 0.95 | 0.98 |
KIRP | 0.00 | 0.00 | 0.51 | 0.93 | 0.92 | 1.00 | 1.00 | 1.00 | 0.89 | 0.92 |
LAML | 0.93 | 0.83 | 1.00 | 0.99 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 |
LGG | 0.72 | 0.16 | 0.99 | 0.99 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 |
LIHC | 0.01 | 0.01 | 0.93 | 0.98 | 1.00 | 1.00 | 1.00 | 1.00 | 0.99 | 0.99 |
LUAD | 0.06 | 0.05 | 0.90 | 0.80 | 0.99 | 0.96 | 1.00 | 1.00 | 0.96 | 0.97 |
LUSC | 0.00 | 0.03 | 0.49 | 0.85 | 0.94 | 0.99 | 1.00 | 1.00 | 0.86 | 0.94 |
MESO | 0.03 | 0.00 | 0.50 | 0.78 | 0.79 | 0.95 | 0.89 | 1.00 | 0.92 | 0.95 |
PAAD | 0.00 | 0.08 | 0.84 | 0.83 | 0.99 | 0.99 | 1.00 | 1.00 | 0.95| | 0.93 |
PCPG | 0.14 | 0.80 | 0.98 | 0.97 | 1.00 | 1.00 | 1.00 | 1.00 | 0.98 | 1.00 |
READ | 0.01 | 0.03 | 0.08 | 0.09 | 0.15 | 0.17 | 0.33 | 0.23 | 0.00 | 0.00 |
SARC | 0.17 | 0.06 | 0.88 | 0.83 | 0.98 | 0.95 | 1.00 | 1.00 | 1.00 | 0.99 |
SKCM | 0.15 | 0.01 | 0.89 | 0.90 | 0.98 | 0.98 | 1.00 | 1.00 | 0.98 | 0.97 |
THCA | 0.81 | 0.71 | 1.00 | 0.96 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 |
THYM | 0.09 | 0.08 | 0.85 | 0.89 | 1.00 | 0.99 | 1.00 | 1.00 | 0.98 | 0.92 |
UVM | 0.76 | 0.28 | 0.95 | 0.92 | 0.99 | 0.99 | 1.00 | 1.00 | 1.00 | 0.97 |
ESCA | 0.00 | 0.05 | 0.02 | 0.35 | 0.61 | 0.97 | 0.80 | 1.00 | 0.38 | 0.64 |
STAD | 0.07 | 0.08 | 0.84 | 0.80 | 0.98 | 0.96 | 1.00 | 1.00 | 0.98 | 0.97 |