| Tara Ocean | ||||||||
---|---|---|---|---|---|---|---|---|---|
CLC | IDBA-UD | MEGAHIT | metaSPAdes | MetaVelvet | Omega | Ray Meta | SPAdes | Velvet | |
Number of contigs (≥ 500 bp) | 50,716 | 163,815 | 216,938 | 185,419 | 67,161 | 15,982 | 6128 | 220,178 | 57,816 |
Total length | 46,069,409 | 179,686,756 | 210,621,485 | 202,770,058 | 55,972,515 | 34,861,819 | 7,277,214 | 275,920,632 | 45,425,460 |
No. of long contigs (≥ 1 kbp) | 10,720 | 50,498 | 56,243 | 48,640 | 12,590 | 13,305 | 2179 | 70,711 | 8802 |
No. of ultra-long contigs (≥ 50 kbp) | 0 | 2 | 1 | 37 | 0 | 9 | 0 | 54 | 0 |
Largest contig | 39,748 | 101,400 | 62,649 | 141,519 | 30,177 | 102,255 | 41,443 | 197,381 | 21,980 |
N50 | 880 | 1166 | 982 | 1124 | 805 | 2691 | 1329 | 1415 | 749 |
L50 | 14,113 | 38,236 | 58,246 | 39,033 | 21,544 | 2737 | 1345 | 39,617 | 19,631 |
Mapping rate (%) | 38.98 | 52.24 | 55.92 | 64.03 | 4117 | 13.64 | 8.25 | 64.46 | 48.19 |
Time (seconds) | 3527 | 69,782 | 10,455 | 125,862 | 2527 | 168,213 | 16,419 | 80,039 | 2342 |
Time (minutes) | 58.78 | 1163.03 | 174.25 | 2097.70 | 42.12 | 2803.55 | 273.65 | 1333.98 | 39.03 |
Time (hours) | 0.98 | 19.38 | 2.90 | 34.96 | 0.70 | 46.73 | 4.56 | 22.23 | 0.65 |
Memory required (GB) | 16.23 | 42.84 | 10.58 | 66.53 | 109.37 | 30.7 | 42 | 157.75 | 109.37 |