Table 1 A. salmonicida subsp. salmonicida isolates used in this study
Isolates | Source | Previous A-C rearrangement genotyping | Previous B-C rearrangement genotyping | ISAS5 Z-A rearrangement genotyping | pAsa9 genotyping |
|---|---|---|---|---|---|
Parental strains | |||||
 A449 | [32] | − | − | − | − |
 01-B526 | [55] | − | − | − | + |
 01-B516 | [29] | − | − | − | − |
Displaying Type 1 Loss profile | |||||
 A449-R1 | [29] | − | + | − | − |
 A449-R3 | [29] | − | + | − | − |
 A449-R4 | [29] | − | + | − | − |
 01-B526-R2 | [29] | − | + | − | + |
 01-B526-R3 | [29] | − | − | + | + |
 01-B526-R5 | [29] | − | + | − | + |
 01-B526-R6 | [29] | − | − | + | + |
 01-B526-R7 | [29] | − | − | + | + |
 01-B526-R8 | [29] | − | − | + | + |
 01-B526-R9 | [29] | − | − | + | + |
 01-B526-R10 | [29] | − | − | + | + |
 01-B526-R11 | [29] | − | − | + | + |
 01-B526-R12 | [29] | − | − | + | + |
 01-B526-R13 | [29] | − | − | + | + |
 01-B526-R14 | [29] | − | − | + | + |
 01-B526-R15 | [29] | − | − | + | + |
 01-B526-R16 | [29] | − | − | + | + |
 01-B526-R17 | [29] | − | − | − | + |
 01-B526-R18 | [29] | − | − | + | + |
 01-B526-R19 | [29] | − | − | + | + |
 01-B526–3 (mistaken for 01-B516–3) | [29] | − | − | + | + |
 01-B526–11 (mistaken for 01-B516–11) | [29] | − | − | + | + |
 01-B526–30 (mistaken for 01-B516–30) | [29] | − | + | − | + |
Displaying Type 2 loss profile | |||||
 A449-R2 | [29] | + | − | − | − |
 A449-R5 | [29] | + | − | − | − |
 01-B526-R4 | [29] | + | − | − | + |