Table 1 Number and density of SNPs in euchromatic (EU) and heterochromatic (HET) regions, sequence length, and the average SNP density of each chromosome
Chromosome | Number of SNPs in EU regions | Sequence length of EU regions (Mb) | SNP density in EU regions (Kb/SNP) | Number of SNPs in HET regions | Sequence length of HET regions (Mb) | SNP density in HET regions (Kb/SNP) | Number of SNPs | Sequence length (Mb) | SNP density (Kb/SNP) |
|---|---|---|---|---|---|---|---|---|---|
Chr.01 | 1012 | 14.8 | 14.6 | 425 | 41.1 | 96.6 | 1437 | 55.9 | 39.2 |
Chr.02 | 1853 | 26.2 | 14.1 | 261 | 25.3 | 97.1 | 2114 | 51.6 | 24.3 |
Chr.03 | 1160 | 18.8 | 16.2 | 212 | 28.9 | 136.1 | 1372 | 47.7 | 34.8 |
Chr.04 | 1249 | 18.8 | 15.0 | 390 | 30.1 | 77.3 | 1639 | 49.2 | 30.0 |
Chr.05 | 1425 | 21.8 | 15.3 | 83 | 18.8 | 227.1 | 1508 | 41.9 | 27.8 |
Chr.06 | 1326 | 22.0 | 16.6 | 315 | 28.6 | 90.8 | 1641 | 50.6 | 30.9 |
Chr.07 | 1630 | 27.5 | 16.9 | 168 | 17.0 | 101.4 | 1798 | 44.7 | 24.8 |
Chr.08 | 1960 | 30.5 | 15.6 | 182 | 15.8 | 86.5 | 2142 | 46.9 | 21.9 |
Chr.09 | 1262 | 17.4 | 13.8 | 369 | 29.2 | 79.0 | 1631 | 46.8 | 28.7 |
Chr.10 | 1536 | 24.1 | 15.7 | 337 | 26.7 | 79.2 | 1873 | 50.9 | 27.2 |
Chr.11 | 1241 | 24.3 | 19.6 | 111 | 14.7 | 132.2 | 1352 | 39.2 | 29.0 |
Chr.12 | 1140 | 17.0 | 14.9 | 135 | 22.6 | 167.2 | 1275 | 40.1 | 31.5 |
Chr.13 | 2086 | 29.5 | 14.1 | 171 | 14.7 | 86.2 | 2257 | 44.3 | 19.6 |
Chr.14 | 1345 | 20.3 | 15.1 | 307 | 29.3 | 95.3 | 1652 | 49.7 | 30.1 |
Chr.15 | 1779 | 22.9 | 12.9 | 309 | 27.5 | 89.1 | 2088 | 50.9 | 24.4 |
Chr.16 | 1246 | 17.6 | 14.1 | 225 | 19.6 | 87.3 | 1471 | 37.3 | 25.4 |
Chr.17 | 1422 | 20.1 | 14.2 | 289 | 21.6 | 74.7 | 1711 | 41.9 | 24.5 |
Chr.18 | 2480 | 36.6 | 14.7 | 309 | 25.5 | 82.6 | 2789 | 62.3 | 22.3 |
Chr.19 | 1660 | 27.4 | 16.5 | 331 | 23.2 | 70.0 | 1991 | 50.6 | 25.4 |
Chr.20 | 1007 | 17.6 | 17.5 | 261 | 26.6 | 101.9 | 1268 | 46.8 | 36.9 |
Average | 1491 | 22.8 | 15.4 | 260 | 24.3 | 102.9 | 1750 | 47.5 | 27.9 |