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Table 2 SNPs associated with seed weight identified by MLM based on 166 accessions grown at Beltsville, MD in 2012 and 2013

From: Identification of QTL with large effect on seed weight in a selective population of soybean with genome-wide association and fixation index analyses

SNP ID Allele MAF Fst –log (p) R2 Allelic effect (g)
2012 2013 2012 2013 2012 2013
Gm04_20336481 C:T 0.46 0.562 3.11 3.40 0.075 0.072 −3.99 −4.89
Gm04_20729591 A:G 0.46 0.569 3.01 3.09 0.069 0.073 −3.94 −4.64
Gm04_24276060 G:T 0.46 0.572 3.04 3.11 0.069 0.073 3.97 4.67
Gm04_27912357 C:T 0.43 0.602 4.06 4.52 0.096 0.111 −4.86 −6.00
Gm04_37010886 C:T 0.42 0.649 3.91 5.17 0.090 0.128 −5.22 −7.15
Gm17_2500016 C:T 0.28 0.574 3.27 3.91 0.073 0.092 −3.33 −4.27
Gm17_2500333 G:T 0.29 0.598 3.53 4.55 0.079 0.106 −3.51 −4.71
Gm17_8635426 C:T 0.41 0.635 3.33 5.41 0.075 0.132 −3.97 −6.15