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Table 3 Haplotype (HAP) ID and position as well as haplotype effect on seed weight estimated based on 166 accessions grown at Beltsville, MD in 2012 and 2013, and on 3753 accessions from USDA Soybean Germplasm Collection at Germplasm Resources Information Network (GRIN)

From: Identification of QTL with large effect on seed weight in a selective population of soybean with genome-wide association and fixation index analyses

SNP ID

HAP block

Seed weight for Hap within 166 accessions

Seed weight for Hap within 3753 accessions

HAP block ID

HAP block position

HAP name

Number of accessions

2012 (g)

2013 (g)

Number of accessions

Seed weight in GRIN (g)

Gm04_20336481

Block 1

24,300,386–39,511,809

HAP1

26

11.2

11.8

290

10.0

Gm04_20729591

HAP2

25

23.6

26.1

1104

20.7

Gm04_24276060

HAP3

17

13.2

13.6

181

17.0

Gm04_27912357

HAP4

14

20.0

23.2

121

19.4

Gm17_2500016

Block 2

2,485,630-2,553,448

HAP1

69

13.8

14.7

1435

14.2

Gm17_2500333

HAP2

44

23.2

25.9

1022

22.3

 

HAP3

27

10.8

11.4

286

9.4

Gm17_8635426

Block 3

8,296,198-8,464,870

HAP1

68

19.9

22.2

2151

18.9

 

HAP2

47

10.2

10.2

512

9.3

 

HAP3

21

20.3

23.4

201

19.5