Species | Samples | Raw reads | <18Â nt reads | >30Â nt reads | Clean reads | GC(%) | Q20(%) | CycleQ20(%) | Q30(%) |
---|---|---|---|---|---|---|---|---|---|
C. meiocarpa | S01 | 29,906,668 | 1,658,148 | 7,025,688 | 20,417,236 | 49.32 | 93.1 | 100 | 86.98 |
S02 | 32,844,767 | 1,179,743 | 3,844,931 | 27,795,553 | 47.75 | 91.9 | 100 | 86.17 | |
S03 | 28,888,019 | 1,676,660 | 3,899,605 | 23,290,661 | 48.54 | 91.42 | 100 | 85.47 | |
S04 | 28,599,822 | 1,902,807 | 3,697,488 | 2,2978,269 | 48.32 | 91.22 | 100 | 85.29 | |
S05 | 32,967,901 | 2,333,282 | 4,738,442 | 25,871,287 | 48.67 | 91.24 | 100 | 85.36 | |
Average | 30,641,435 | 1,750,128 | 4,641,231 | 24,070,601 | 48.52 | 91.78 | 100 | 85.86 | |
C. oleifera | S06 | 34,169,238 | 4,386,045 | 4,606,664 | 25,151,946 | 49.13 | 91.23 | 100 | 85.25 |
S07 | 31,865,014 | 1,751,974 | 9,877,436 | 19,405,898 | 49.28 | 93.21 | 100 | 87.02 | |
S08 | 30,501,297 | 2,833,009 | 4,644,107 | 23,001,131 | 48.99 | 91.35 | 100 | 85.43 | |
S09 | 31,087,840 | 3,519,595 | 5,720,360 | 21,016,629 | 49.7 | 93.05 | 100 | 86.74 | |
S10 | 27,438,132 | 3,369,136 | 3,659,237 | 19,692,318 | 49.55 | 93.09 | 100 | 86.86 | |
Average | 31,012,304 | 3,171,952 | 5,701,561 | 21,653,584 | 49.33 | 92.39 | 100 | 86.26 |