Table 2 Analysis of short and long tandem repeats in three assemblies of rice
From: Hybrid assembly with long and short reads improves discovery of gene family expansions
A | Category | ALLPATHS | PBJelly | Alpaca |
Unit > =2Kbp | One scaffold | 2.4% | 6.9% | 51.6% |
Two scaffolds | 4.2% | 25.3% | 36.5% | |
Underrepresented | 93.4% | 67.8% | 11.8% | |
Total | 4734 | 4734 | 4734 | |
Unit < 2Kbp | One scaffold | 71.3% | 81.8% | 80.1% |
Two scaffolds | 12.8% | 12.0% | 6.7% | |
Underrepresented | 15.9% | 6.2% | 13.2% | |
Total | 61,140 | 61,140 | 61,140 | |
B | Category | ALLPATHS | PBJelly | Alpaca |
Unit > =2Kbp | One chromosome | 43.9% | 32.1% | 61.3% |
Two chromosomes | 0.9% | 1.1% | 4.7% | |
Underrepresented | 55.3% | 66.8% | 33.9% | |
Total | 114 | 184 | 548 | |
Unit < 2Kbp | One chromosome | 61.6% | 58.1% | 73.3% |
Two chromosomes | 4.1% | 4.2% | 1.9% | |
Underrepresented | 34.3% | 37.7% | 24.7% | |
Total | 8079 | 8034 | 9368 |