Hybrid assembly with long and short reads improves discovery of gene family expansions

BMC Genomics

Table 3 Counts and lengths of alignments to the reference

	Accession	ALLPATHS	PBJelly	Alpaca
Count, 2Kbp or longer	HM034	296	553	2058
	HM056	257	436	1652
	HM340	273	443	1947
Count, Under 2Kbp	HM034	14,990	14,911	18,888
	HM056	14,665	14,110	14,603
	HM340	18,206	17,225	19,334
Average length	HM034	294	388	769
	HM056	291	373	767
	HM340	271	336	730

In each of three Medicago accessions assembled three ways, the Alpaca assembly contained the most repeats and the largest average repeat length

ISSN: 1471-2164