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Table 1 Significant SNPs from case-control association analysis for temperature-dependent sex in Nile tilapia

From: ddRADseq reveals determinants for temperature-dependent sex reversal in Nile tilapia on LG23

LG bp N cases N controls Allele frequency in cases Allele frequency in controls Minor allele Major allele Chi-Square P Odds Ratio L95 U95
5 23,554,897 43 46 0.163 0.391 A G 11.49 0.000699 0.303 0.149 0.615
5 34,055,582 43 45 0.349 0.133 T C 11.24 0.000800 3.482 1.641 7.389
6 30,817,177 42 51 0.012 0.157 C T 11.66 0.000640 0.065 0.008 0.499
23 6,588,528 43 45 0.488 0.233 C T 12.45 0.000419 3.136 1.644 5.984
23 9,212,758 53 53 0.170 0.387 G A 12.42 0.000424 0.324 0.171 0.615
23 9,441,132 43 44 0.163 0.614 G C 37.13 0.000001 0.122 0.060 0.250
23 9,546,272 45 46 0.267 0.609 A G 21.6 0.003350 0.234 0.125 0.438
23 11,011,948 50 46 0.220 0.587 G C 26.98 0.000206 0.199 0.106 0.372
23 11,011,949 49 47 0.235 0.596 C T 25.83 0.000373 0.208 0.112 0.388
23 11,203,620 51 54 0.284 0.102 T C 11.33 0.000764 3.503 1.642 7.472
24 1,470,141 44 55 0.193 0.418 C G 11.41 0.000731 0.333 0.174 0.639
  1. LG Linkage group, bp base pair, cases temperature-treated males, controls temperature-treated but non-masculinized females, Chi-square basic allelic test chi-square (1df), P asymptotic p-value for basic allelic test, L95 Lower bound of 95% confidence interval for odds ratio, U95 upper bound of 95% confidence interval for odds ratio