Table 7 AUGUSTUS protein prediction results: BLASTP comparison of R-proteins predicted of all assemblies with the 641 predicted R-proteins of the 649 NLR gene reference (amino acids is abbreviated with aa)
Canu MinION (nanopolish) | Canu MinION (nanopolish, pilon) | Canu PacBio | HGAP | Geneious | |
|---|---|---|---|---|---|
Predicted R-proteins | 649 | 675 | 611 | 805 | 702 |
NLR-Parser complete | 174 | 283 | 251 | 310 | 380 |
NLR-Parser partial | 475 | 392 | 361 | 495 | 322 |
R-proteins with BLASTP hit | 368 | 496 | 445 | 533 | 587 |
% Database coverage | 57.41% | 77.37% | 69.42% | 83.15% | 91.57% |
% identity to reference | 90.67% ± 9.06% | 95.53% ± 8.42% | 98.19% ± 5.59% | 99.22% ± 2.98% | 99.87% ± 1.12% |
BLASTP alignment length of R-proteins | 826aa ± 278aa | 921aa ± 301aa | 914aa ± 296aa | 954 aa ±299 aa | 971 aa ±330 aa |
BLASTP % alignment length of R-proteins | 84.11% ± 18.18% | 93.65% ± 13.74% | 93.81% ± 13.62% | 95.50% ± 10.82% | 98.30% ± 6.12% |