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Table 1 Expressed PHAS loci in de-etiolating seedlings

From: Unraveling multifaceted contributions of small regulatory RNAs to photomorphogenic development in Arabidopsis

PHAS locus Gene Chromosome phasiR trigger Start End n k p-value
At1g62910 RFL9 (PPR) 1 TAS2 3′-D6 (−) 23,299,624 23,299,875 77 14 2.0 × 10−7
At1g63130 RPF6 1 ta-siR2140 23,413,391 23,413,642 13 7 7.3 × 10−7
At1g50055 TAS1B 1 miR173 18,549,441 18,549,692 60 12 9.7 × 10−7
At1g63070 PPR 1 ta-siR2140 23,386,420 23,386,671 50 11 1.3 × 10−6
At1g63150 * 1 TAS2 3′-D6 (−) 23,420,003 23,420,254 80 12 2.7 × 10−5
At1g62930 RPF3 (PPR) 1 miR161.1 23,307,125 23,307,466 99 13 4.5 × 10−5
At1g63080 PPR 1 ta-siR2140 23,389,990 23,390,241 58 10 5.5 × 10−5
At1g62590 PPR-AC 1 TAS2 3′-D6 (−) 23,178,438 23,178,689 27 7 7.1 × 10−5
At2g39681 TAS2 2 miR173 16,539,919 16,540,170 12 9 1.9 × 10−9
At2g39675 TAS1C 2 miR173 16,537,860 16,538,111 10 7 1.5 × 10−8
At2g27400 TAS1A 2 miR173 11,722,009 11,722,260 21 8 6.2 × 10−7
At3g17185 TAS3 3 miR390 5,682,143 5,682,394 80 14 3.4 × 10−7
  1. n: Number of distinct alignments
  2. k: Number of phased alignments, based on hypergeometric distribution
  3. *: Reported PHAS locus
  4. Loci with p < 10−4 are listed