Table 2 Differentially expressed miRNAs in de-etiolating Arabidopsis seedlings, with average log2 fold-change listed
Cluster I | W0Â h | W1Â h | W3Â h | W6Â h | W12Â h | W24Â h |
 miR163 | 0 | 3.230582 | 5.070049 | 6.036598 | 5.963276 | 6.724631 |
Cluster II | W0Â h | W1Â h | W3Â h | W6Â h | W12Â h | W24Â h |
 miR5026 | 0 | −0.19729 | 0.609021 | −0.33921 | 0.435821 | 0.256526 |
 miR825 | 0 | −0.55657 | −0.0974 | 0.484967 | 0.475439 | 0.143117 |
 miR869.2 | 0 | −0.44551 | −0.24714 | 0.236649 | −0.06937 | 0.766993 |
 miR156c-3p | 0 | 0.008901 | 0.458674 | −0.41258 | 0.129615 | 0.571201 |
 miR170-3p | 0 | 0.199128 | 0.233507 | 0.359504 | 0.420726 | −0.0398 |
 miR2933a | 0 | −0.73393 | 0.087544 | 0.296233 | −0.12048 | 0.00611 |
 miR2933b | 0 | −0.73393 | 0.087544 | 0.296233 | −0.12048 | 0.00611 |
 miR5642a | 0 | −0.12856 | 0.102902 | 0.354152 | 0.920248 | 0.760898 |
 miR157d | 0 | 0.366314 | 0.311192 | 0.17222 | 0.304513 | 0.640368 |
 miR167a-3p | 0 | 0.046902 | 0.474899 | 0.574704 | 0.480747 | 0.881156 |
 miR833b | 0 | 1.053165 | 0.727714 | 0.849033 | 0.892631 | 0.279323 |
 miR858a | 0 | 0.657713 | 0.522465 | 0.833586 | 0.69362 | 0.780516 |
 miR157a-3p | 0 | 0.119139 | 0.300398 | 0.181048 | 0.842913 | 1.197978 |
 miR157b-3p | 0 | 0.112265 | 0.292249 | 0.169389 | 0.833254 | 1.186319 |
 miR157c-3p | 0 | 0.18009 | 0.174448 | 1.165619 | 1.299035 | 2.35774 |
Cluster III | W0Â h | W1Â h | W3Â h | W6Â h | W12Â h | W24Â h |
 miR158b | 0 | 0.068148 | −0.23119 | 0.046673 | −0.49671 | −0.77436 |
 miR162a-3p | 0 | 0.216902 | −0.35089 | −0.001 | −0.53321 | −1.32163 |
 miR390a-5p | 0 | 0.041912 | −0.24039 | −0.52191 | −0.83531 | −0.94731 |
 miR398c-3p | 0 | 0.233205 | −0.74225 | 0.337007 | −0.5905 | −1.54736 |
 miR399b | 0 | −0.32628 | −0.03547 | −0.57065 | −0.81218 | −1.16872 |
 miR399c-3p | 0 | −0.13086 | 0.021596 | −0.5015 | −0.75814 | −1.10903 |
 miR829-3p.1 | 0 | −0.19326 | −0.0353 | −0.14504 | −0.74384 | −0.90991 |
 miR829-5p | 0 | 0.017165 | −0.29223 | −0.32674 | −0.66067 | −0.74456 |
 miR162b-3p | 0 | 0.215734 | −0.35239 | −0.00193 | −0.53434 | −1.32203 |
 miR162b-5p | 0 | 0.057888 | −0.1911 | 0.175723 | −0.742 | −1.07194 |
 miR169a-3p | 0 | −0.35672 | −0.10399 | −0.09992 | −0.43079 | −0.99436 |
 miR173-5p | 0 | −0.04189 | −0.26578 | −0.30136 | −0.5118 | −0.95313 |
 miR390b-5p | 0 | 0.041759 | −0.2396 | −0.52135 | −0.83081 | −0.94673 |
 miR396b-3p | 0 | −0.19923 | −0.26739 | −0.52009 | −0.66862 | −1.11049 |
 miR398b-3p | 0 | 0.233205 | −0.74225 | 0.337007 | −0.5905 | −1.54736 |
 miR823 | 0 | −0.25067 | 0.109541 | −0.45625 | −0.76484 | −0.99271 |
 miR839-5p | 0 | −0.9158 | 0.276875 | −0.35478 | −0.56659 | −1.1664 |
 miR166a-3p | 0 | 0.141355 | 0.079493 | −0.11147 | −0.50323 | −0.56368 |
 miR166b-3p | 0 | 0.158125 | 0.078693 | −0.10249 | −0.52608 | −0.57401 |
 miR166c | 0 | 0.157754 | 0.078204 | −0.10279 | −0.52633 | −0.57431 |
 miR166d | 0 | 0.1578 | 0.078219 | −0.1028 | −0.52637 | −0.5743 |
 miR166e-3p | 0 | 0.157828 | 0.07835 | −0.10235 | −0.52615 | −0.57403 |
 miR166f | 0 | 0.157829 | 0.078349 | −0.10233 | −0.5261 | −0.574 |
 miR166g | 0 | 0.157513 | 0.077882 | −0.10266 | −0.52644 | −0.57431 |
 miR169b-3p | 0 | 0.046702 | 0.084603 | −0.51457 | 0.08493 | −0.43209 |
 miR169i | 0 | −0.21387 | 0.036407 | −0.3923 | −0.08524 | −0.29972 |
 miR171c-5p | 0 | −0.24785 | −0.51146 | −0.30205 | −0.45579 | −0.08671 |
 miR319b | 0 | 0.101478 | 0.007334 | 0.230599 | −0.43223 | −0.64435 |
 miR393b-3p | 0 | −0.22189 | −0.24646 | −0.14695 | −0.49096 | −0.49076 |
 miR408-3p | 0 | −0.24897 | −0.16535 | 0.122217 | −0.11517 | −0.57962 |
 miR5644 | 0 | −0.46437 | −0.21745 | −0.08393 | −0.26968 | −0.45617 |
 miR156h | 0 | −0.44634 | −0.37253 | −0.19148 | −0.36689 | −0.10394 |
 miR160c-3p | 0 | −0.17658 | −0.29051 | −0.33976 | −0.00825 | 0.041016 |
 miR169m | 0 | −0.12627 | 0.064869 | −0.27125 | 0.118007 | −0.32789 |
 miR166a-5p | 0 | −0.14566 | −0.30587 | −0.69082 | −1.16879 | −1.42452 |
 miR395e | 0 | −0.52798 | −0.63659 | −0.291 | −1.43631 | −1.91425 |
 miR5646 | 0 | −0.55674 | −0.18855 | −0.6301 | −1.65092 | −1.82573 |
 miR166b-5p | 0 | −0.14566 | −0.30587 | −0.69082 | −1.16879 | −1.42452 |
 miR166e-5p | 0 | −0.49789 | −0.68724 | −1.10023 | −1.47964 | −1.73891 |
 miR390b-3p | 0 | −0.32255 | −0.76324 | −0.65686 | −1.66625 | −1.99135 |
 miR395a | 0 | −0.52798 | −0.63659 | −0.29058 | −1.43631 | −1.91425 |
 miR395b | 0 | −0.30231 | −0.53107 | −0.43895 | −1.02895 | −2.04242 |
 miR395c | 0 | −0.30231 | −0.53107 | −0.43895 | −1.02895 | −2.04242 |
 miR395d | 0 | −0.52798 | −0.63659 | −0.29058 | −1.43631 | −1.91425 |
 miR395f | 0 | −0.30231 | −0.57998 | −0.43895 | −1.02895 | −2.04242 |
 miR396a-3p | 0 | −0.16376 | −0.71517 | −0.7776 | −1.56218 | −2.04976 |
 miR408-5p | 0 | −0.44974 | −0.17004 | −0.65167 | −1.20912 | −1.72316 |
 miR5012 | 0 | −0.37776 | −0.43595 | −0.68763 | −1.5225 | −1.78667 |
 miR5024-3p | 0 | −0.59768 | −0.10816 | −0.63027 | −1.32052 | −2.05354 |
 miR5634 | 0 | −0.19003 | −0.51725 | −0.68077 | −0.88666 | −1.19981 |