Skip to main content
Fig. 1 | BMC Genomics

Fig. 1

From: Comparative genomic analysis and characterization of incompatibility group FIB plasmid encoded virulence factors of Salmonella enterica isolated from food sources

Fig. 1

SNP based phylogenetic analysis of Salmonella enterica strains isolated from food, animal, and human sources. a SNP based evolutionary tree showed that each serovar joined distinct phylogenetic clades, irrespective of presence or absence of an IncFIB plasmid. b Five IncFIB containing S. Typhimurium isolates (SE163A, SE696A, SE710A, SE452, and SE478) clustered in one clade (shown in the box) and SE397 was found to be identical to S. Typhimurium USDA-1880. Seven S. enterica isolates (SE163A, SE696A, SE710A, SE452, SE478, SE397 and SE819) marked with text boxes were sequenced in our study; the genome sequences of the other isolates were obtained from a public data base. Harvest, a core genome SNP mining tool (https://www.cbcb.umd.edu/software/harvest), was used to generate the SNP tree. S. enterica SL476 was employed as a reference for SNP detection

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us