Differential gene expression in tomato fruit and Colletotrichum gloeosporioides during colonization of the RNAi–SlPH tomato line with reduced fruit acidity and higher pH

Table 3 Upregulated and downregulated pathways in C. gloeosporioides-infected RNAi–SlPH lines compared to WT lines

	Pathway name	P-value
Upregulated	matairesinol biosynthesis	0.0049779
	UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate)	0.0165126
	free phenylpropanoid acid biosynthesis	0.0246834
	gibberellin inactivation	0.0408552
Downregulated	glyoxylate cycle	0.0012551
	glycolate and glyoxylate degradation II	0.0015753
	cytokinin degradation	0.003706
	superpathway of glyoxylate cycle	0.0070379
	wax ester biosynthesis II	0.0117932
	anthocyanin biosynthesis (delphinidin 3-O-glucoside)	0.0181857
	L-arabinose degradation II	0.0209389
	anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside)	0.0218204
	leucopelargonidin and leucocyanidin biosynthesis	0.0263502
	leucodelphinidin biosynthesis	0.0263502
	glycogen degradation I	0.0320831
	melibiose degradation	0.0414508

ISSN: 1471-2164