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Table 3 Significant Gene Ontology (GO) terms of hyper-methylated genes in NJCMS5A

From: Genome-wide comparative analysis of DNA methylation between soybean cytoplasmic male-sterile line NJCMS5A and its maintainer NJCMS5B

GO accession Term type Description DMR _ item BG _ item P _ value
GO:0019058 BP viral infectious cycle 6 364 0.0022802
GO:0006011 BP UDP-glucose metabolic process 1 1 0.0036546
GO:0015977 BP carbon fixation 2 25 0.0037648
GO:0016042 BP lipid catabolic process 3 109 0.0075620
GO:0044403 BP symbiosis, encompassing mutualism through parasitism 8 789 0.0086707
GO:0071704 BP organic substance metabolic process 76 16,860 0.0089794
GO:0044419 BP interspecies interaction between organisms 8 796 0.0091147
GO:0006099 BP tricarboxylic acid cycle 2 40 0.0094446
GO:0000723 BP telomere maintenance 5 350 0.0094633
GO:0032200 BP telomere organization 5 350 0.0094633
GO:0060249 BP anatomical structure homeostasis 5 350 0.0094633
GO:0019067 BP viral assembly, maturation, egress, and release 3 130 0.0121930
GO:0009060 BP aerobic respiration 2 46 0.0123550
GO:0016032 BP viral process 7 725 0.0175200
GO:0044238 BP primary metabolic process 72 16,245 0.0190260
GO:0009225 BP nucleotide-sugar metabolic process 1 6 0.0217300
GO:0034219 BP carbohydrate transmembrane transport 1 6 0.0217300
GO:0071806 BP protein transmembrane transport 2 66 0.0244210
GO:0006367 BP transcription initiation from RNA polymerase II promoter 2 67 0.0251130
GO:0030150 BP protein import into mitochondrial matrix 1 7 0.0253060
GO:0044764 BP multi-organism cellular process 7 785 0.0256590
GO:0015074 BP DNA integration 2 69 0.0265210
GO:0044237 BP cellular metabolic process 67 15,179 0.0286360
GO:0072519 BP parasitism 1 9 0.0324180
GO:0018149 BP peptide cross-linking 1 10 0.0359550
GO:0006464 BP cellular protein modification process 19 3357 0.0370220
GO:0036211 BP protein modification process 19 3357 0.0370220
GO:0006468 BP protein phosphorylation 15 2522 0.0427720
GO:0019068 BP virion assembly 2 90 0.0430940
GO:0043170 BP macromolecule metabolic process 57 12,853 0.0449750
GO:0043412 BP macromolecule modification 20 3665 0.0451580
GO:0032940 BP secretion by cell 3 221 0.0477090
GO:0046903 BP secretion 3 221 0.0477090
GO:0006807 BP nitrogen compound metabolic process 41 8794 0.0487850
GO:0000079 BP regulation of cyclin-dependent protein serine/threonine kinase activity 1 14 0.0499750
GO:0071900 BP regulation of protein serine/threonine kinase activity 1 14 0.0499750
GO:0016592 CC mediator complex 4 183 0.0046636
GO:0036126 CC sperm flagellum 1 2 0.0072960
GO:0097223 CC sperm part 1 2 0.0072960
GO:0097228 CC sperm principal piece 1 2 0.0072960
GO:0005654 CC nucleoplasm 5 384 0.0136830
GO:0044451 CC nucleoplasm part 5 384 0.0136830
GO:0071203 CC WASH complex 2 61 0.0210820
GO:0033644 CC host cell membrane 2 67 0.0251130
GO:0044218 CC other organism cell membrane 2 67 0.0251130
GO:0044279 CC other organism membrane 2 67 0.0251130
GO:0044441 CC cilium part 1 7 0.0253060
GO:0036128 CC catSper complex 1 9 0.0324180
GO:0030658 CC transport vesicle membrane 2 87 0.0405380
GO:0019031 CC viral envelope 4 354 0.0413760
GO:0036338 CC viral membrane 4 354 0.0413760
GO:0005891 CC voltage-gated calcium channel complex 1 13 0.0464890
GO:0034704 CC calcium channel complex 1 13 0.0464890
GO:0004675 MF transmembrane receptor protein serine/threonine kinase activity 2 18 0.0019525
GO:0008964 MF phosphoenolpyruvate carboxylase activity 2 20 0.0024130
GO:0008234 MF cysteine-type peptidase activity 5 273 0.0033820
GO:0019199 MF transmembrane receptor protein kinase activity 2 25 0.0037648
GO:0001076 MF RNA polymerase II transcription factor binding transcription factor activity 4 180 0.0043995
GO:0001104 MF RNA polymerase II transcription cofactor activity 4 180 0.0043995
GO:0017111 MF nucleoside-triphosphatase activity 17 2371 0.0059866
GO:0000988 MF protein binding transcription factor activity 5 320 0.0065718
GO:0004611 MF phosphoenolpyruvate carboxykinase activity 2 34 0.0068906
GO:0016462 MF pyrophosphatase activity 17 2410 0.0070057
GO:0004197 MF cysteine-type endopeptidase activity 4 221 0.0089745
GO:0016818 MF hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 17 2498 0.0098272
GO:0000989 MF transcription factor binding transcription factor activity 4 228 0.0099793
GO:0003712 MF transcription cofactor activity 4 228 0.0099793
GO:0016787 MF hydrolase activity 38 7372 0.0141010
GO:0016817 MF hydrolase activity, acting on acid anhydrides 17 2626 0.0154860
GO:0005516 MF calmodulin binding 2 56 0.0179520
GO:0000149 MF SNARE binding 1 5 0.0181410
GO:0019905 MF syntaxin binding 1 5 0.0181410
GO:1,901,363 MF heterocyclic compound binding 59 12,823 0.0194820
GO:0097159 MF organic cyclic compound binding 59 12,831 0.0197370
GO:0004386 MF helicase activity 9 1116 0.0217290
GO:0004308 MF exo-alpha-sialidase activity 1 6 0.0217300
GO:0004683 MF calmodulin-dependent protein kinase activity 1 6 0.0217300
GO:0016997 MF alpha-sialidase activity 1 6 0.0217300
GO:0034062 MF RNA polymerase activity 5 448 0.0247360
GO:0070403 MF NAD+ binding 1 7 0.0253060
GO:0016779 MF nucleotidyltransferase activity 7 785 0.0256590
GO:0003676 MF nucleic acid binding 33 6489 0.0271790
GO:0003852 MF 2-isopropylmalate synthase activity 1 8 0.0288680
GO:0008083 MF growth factor activity 2 73 0.0294300
GO:0003899 MF DNA-directed RNA polymerase activity 4 319 0.0299720
GO:0003677 MF DNA binding 23 4224 0.0332160
GO:0016298 MF lipase activity 3 197 0.0359010
GO:0004325 MF ferrochelatase activity 1 10 0.0359550
GO:0038023 MF signaling receptor activity 4 347 0.0389240
GO:0047750 MF cholestenol delta-isomerase activity 1 11 0.0394790
GO:0003678 MF DNA helicase activity 6 693 0.0423700
GO:0016863 MF intramolecular oxidoreductase activity, transposing C = C bonds 1 12 0.0429910
GO:0046915 MF transition metal ion transmembrane transporter activity 3 221 0.0477090
GO:0046789 MF host cell surface receptor binding 1 14 0.0499750
  1. BP biological process; CC cellular component; MF molecular functional; DMR differentially methylated region; BG: background