Table 6 Percentage of the genome covered by the assembly (using QUAST) and HIMME coeff obtained when using a relatively close reference (Staphylococcus Saprophyticus instead of Staphylococcus Aureus)
From: HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment
Using a different reference: Staphylococcus Saprophyticus | Â | ||||||
|---|---|---|---|---|---|---|---|
Metric | ABySS | Allpaths-LG | Bambus2 | MSR-CA | SGA | SOAP denovo | Velvet |
Genome % | 0.241% | 0.120% | 0.231% | 0.637% | 0.354% | 0.254% | 0.322% |
HiMMe coeff | 1.399 | 9.025 | 6.936 | 4.126 | 4.986 | 3.973 | 4.588 |