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Table 1 Top differentially expressed genes responding to near-neutral pH stress in susceptible and tolerant blueberries

From: Regulation of gene expression in roots of the pH-sensitive Vaccinium corymbosum and the pH-tolerant Vaccinium arboreum in response to near neutral pH stress using RNA-Seq

gene_id

logFC

logCPM

P value

FDR

uniprot_id

Evalue

Description

A. Vaccinium corymbosum

 CUFF.22809

−5.07

4.814549

1.80E-11

6.63E-07

A0A118JUM8_CYNCS

8.00E-96

Cupin 1

 CUFF.4259

−4.52

5.452318

1.37E-10

2.52E-06

A0A103XEL9_CYNCS

1.00E-28

Cupredoxin

 CUFF.236

−4.30

4.41962

6.74E-10

5.61E-06

A0A061DQL9_THECC

4.00E-37

Ralf-like 33, putative

 CUFF.28304

−3.62

2.988055

9.58E-10

5.61E-06

A0A0B4VRZ0_SALMI

0

Cytochrome P450 CYP86A91

 CUFF.40209

−3.79

4.908315

9.60E-10

5.61E-06

B9TAC6_RICCO

0

Receptor protein kinase CLAVATA1, putative

 CUFF.54833

−3.94

1.964193

1.22E-09

5.61E-06

B9I5Q8_POPTR

0

Clavata1 receptor kinase family protein

 CUFF.8465

−3.9

4.05831

4.77E-10

5.61E-06

I7AUB2_9ROSI

0

Hydroxycinnamoyl coa shikimate/quinate hydroxycinnamoyl transferase (HCT)

 CUFF.1958

−6.02

6.395831

1.85E-09

7.60E-06

A0A061GZH4_THECC

3.00E-146

Late embryogenesis abundant (LEA) protein-related

 CUFF.38453

−3.16

3.680711

2.07E-09

7.64E-06

B9HEC0_POPTR

8.00E-12

Uncharacterized protein

 CUFF.14284

−5.34

3.369

2.61E-09

8.76E-06

D7UCW0_VITVI

0

Laccase

B. Vaccinium arboreum

 CUFF.1549

2.29

3.15

1.31E-07

1.73E-03

A0A151STL0_CAJCA

3.00E-36

F-box/kelch-repeat protein At3g06240 family

 CUFF.13406

−4.13

5.11

3.82E-07

2.35E-03

A0A103YHW1_CYNCS

1.00E-19

Stigma-specific protein Stig1

 CUFF.34224

4.07

3.56

4.32E-07

2.35E-03

B9GWH1_POPTR

5.00E-41

Putative copper-transporting atpase 3 family protein

 CUFF.4259

−2.50

5.45

4.47E-07

2.35E-03

A0A103XEL9_CYNCS

1.00E-28

Cupredoxin

 CUFF.13402

−4.08

3.97

9.70E-07

2.68E-03

A0A103YHW1_CYNCS

7.00E-23

Stigma-specific protein Stig1

 CUFF.17694

−2.90

4.42

9.18E-07

2.68E-03

A0A067JKU4_JATCU

4.00E-59

Laccase

 CUFF.32389

2.51

3.31

6.37E-07

2.68E-03

A0A075EB50_9ERIC

0

EIN3-like protein EIL3

 CUFF.57421

−2.37

2.43

1.02E-06

2.68E-03

I2BH27_LINUS

3.00E-39

Glycosyltransferase

 CUFF.59288

2.21

5.45

8.89E-07

2.68E-03

E9LK45_VITVI

1.00E-50

Copper transporter

 CUFF.61186

2.84

7.90

1.07E-06

2.68E-03

U5GPN1_POPTR

0.007

Uncharacterized protein

C. Contrasting response

 CUFF.2654

−6.55

5.56

4.63E-09

1.71E-04

A0A0B2Q009_GLYSO

3.00E-106

Prostaglandin G/H synthase 2

 CUFF.24077

3.37

5.06

4.41E-08

8.13E-04

B9RDF5_RICCO

3.00E-155

Alcohol dehydrogenase, putative

 CUFF.236

−4.02

4.42

1.08E-07

1.32E-03

A0A061DQL9_THECC

4.00E-37

Ralf-like 33, putative

 CUFF.12615

−2.99

5.26

1.76E-07

1.35E-03

A0A061EMA1_THECC

8.00E-170

Leucine-rich repeat (LRR) family protein

 CUFF.22809

−4.41

4.81

1.82E-07

1.35E-03

A0A118JUM8_CYNCS

8.00E-96

Cupin 1

 CUFF.32460

−2.27

3.90

4.57E-07

1.57E-03

A0A022Q8S6_ERYGU

7.00E-39

40S ribosomal protein S21

 CUFF.59789

−3.55

2.69

3.98E-07

1.57E-03

A0A061GSM4_THECC

8.00E-16

Uncharacterized protein

 22424_g

−5.27

3.94

5.84E-07

1.80E-03

B9RTU6_RICCO

5.00E-12

Basic 7S globulin 2 small subunit

 CUFF.59379

−4.42

4.00

6.57E-07

1.86E-03

A0A061GZR4_THECC

3.00E-121

Cytochrome P450 94A1

 CUFF.10843

2.36

3.41

7.51E-07

1.91E-03

I6U574_9ROSA

8.00E-37

Dehydration-responsive element binding protein